Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4563g00006 ATGGGATCAAAGATTTGGGGGGATCCAATCATTAGAGGCTCTCAGACTCTCACTGCTTCTCATCGCATTCATGTAGCAAGGGGGATGGATTCAATTTCATCACTAGCGTCATCAGAAAAGCTTCTTTCAATTTCAGATTCTAAAGGAAATCACGAAGTGCACCAGAAAAATCAATTCCTTTCTGACTTAAATCCCATCTGTACTTCAAATGCTTCACCCTCAGGATCCAGAGAAAGTTTCGTTCCTCTAAATCTATTGAAAACACTTCCAGCATTACCAACAGAAGACGCATCTGATGAGTCAGCTTCTTCAACTGCTACATCTAGATTTCCATATTTGACATTGTTTCTGCAGGAGCCCTCCATGCTGTTTTCATCATCCTCAAAGGTCACTGAGTCGCTAGGCAAGCCCAAAAATTGTGAATCTCACCCAAAGATTTCAGACACTTCATTTTCTGTGTCCCAGTGTCATGCAATTCACAGCAAGGCAGTTACGGATCCACTCAAAATGAATCAGAGTCCTAAAAACTTCCGATCCAGGTCTTTTAATGACTATTGTTTGAGCACCAGCAAGACTCAGCCTATGAAGTATGCTGGACGAGGCAAGCTGTTTAAGGGGGTGAGGCAAAGACACTGGGGAAAATGGGTTGCAGAGATTAGACTGCCAAGGAATAGAACGAGGGTTTGGCTAGGGACATTTGACACAGCCGAAGATGCAGCCATGGCCTATGACACAGCTGCATACATACTTCGTGGAGAATATGCTCAACTGAACTTTCCAGATCTAAAGCATCACATCAAGGCCAATTCTTTGAATGGAACAACAGCTGCCCTCCTCGAGGCAAAGCTTCAAGCAATATCACAAGGAATTTCTTCTCAAAAAGTGCCCACTGATTCTCTGCCAGGATCATTGGATAAGAACCCAGCTGACAACACCAAAATCGATGGTAAAAATCAGAATCCAGCTAAAAAAGAATGGCAGTTTGAGATAGAGAACAAGGTTGGAGCTGATACAGTTGAGAGAAGCAAAAATAATCAGCAGGAGATATCGGGCGTGGAAGCTATTCAGTTAAGTAGAATGCCCTCATTAGATATGGACATCATTTGGGATTCTCTTTTAGTCCCCGATGCATGA 1134 0.4303 MGSKIWGDPIIRGSQTLTASHRIHVARGMDSISSLASSEKLLSISDSKGNHEVHQKNQFLSDLNPICTSNASPSGSRESFVPLNLLKTLPALPTEDASDESASSTATSRFPYLTLFLQEPSMLFSSSSKVTESLGKPKNCESHPKISDTSFSVSQCHAIHSKAVTDPLKMNQSPKNFRSRSFNDYCLSTSKTQPMKYAGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAMAYDTAAYILRGEYAQLNFPDLKHHIKANSLNGTTAALLEAKLQAISQGISSQKVPTDSLPGSLDKNPADNTKIDGKNQNPAKKEWQFEIENKVGADTVERSKNNQQEISGVEAIQLSRMPSLDMDIIWDSLLVPDA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4563g00006 377 PRINTS Ethylene responsive element binding protein signature 204 215 IPR001471 GO:0003700|GO:0006355
Pral4563g00006 377 PRINTS Ethylene responsive element binding protein signature 226 242 IPR001471 GO:0003700|GO:0006355
Pral4563g00006 377 CDD AP2 202 262 IPR001471 GO:0003700|GO:0006355
Pral4563g00006 377 MobiDBLite consensus disorder prediction 294 324 - -
Pral4563g00006 377 ProSiteProfiles AP2/ERF domain profile. 203 260 IPR001471 GO:0003700|GO:0006355
Pral4563g00006 377 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 52 372 - -
Pral4563g00006 377 FunFam Ethylene-responsive transcription factor 2 202 261 - -
Pral4563g00006 377 Gene3D AP2/ERF domain 203 261 IPR036955 GO:0003700|GO:0006355
Pral4563g00006 377 SMART rav1_2 203 266 IPR001471 GO:0003700|GO:0006355
Pral4563g00006 377 SUPERFAMILY DNA-binding domain 203 261 IPR016177 GO:0003677
Pral4563g00006 377 Pfam AP2 domain 204 252 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4563g00006 Pral-Chr4563 35830 37450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4563g00006 59 377 AP2-EREBP Transcription Factor Family AT4G13620 41.590 4.40e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4563g00006 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4563g00006 - - pcin:129309727 556.599