Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4563g00005 ATGGCATCAACATCGGATGCCTCCAAGACTTCATTCCCTGTGACAGAGGCAGCTTCGAACTTCTATCTGTATCCTGCTCCTCTTGCAAAATTTGATGATATCGCGGGTGATCCCAGGCTCTTTTTGTACACATTGGAGAAGCTCAACAATCGTCTGGGTTCCAAGTTCATGATACCCATTATAGGGGGAAAAGAACTAGATTTGCATCGGCTTTTCTTGCAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTCTTTTCAAATTTCCATCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGGTCAATTGCTTTACCACTATGAACAATTATACTATTTGAAGGCCCCAGGATGGACCCATATACCTTCTGATGCTTTGCAGAGTTCATTGCATGTTCCAGTTCCTACAAGAATACAGCCGATTTTGCATCCCCCAGTTAATGCCTCTGAATTGCCTGAAGCAACTTCAGCTTCTTCTGCAGGGACTCCAGTGATTGGGGTGATTGATGGAAAATTCGAAAGTGGGTATCTTGTTACTGTCACACTGGGTTCAGAGAAACTTAAAGGTGTGCTATATCAGGCTCCACAAAACCCTGCGTTGCCAACAATGCTGCAACATAGTAGTGTTCCAGTTAATTACAGCAATACCTCATCAGCTGCTTTGGGTGTCCATCGTCACCGACGTAAGAAATCTGAGATAAAAAAGAGAGATCCTGATCATCCTAAACCTAATCGAAGCGGATACAATTTCTTCTTTGCAGAGCAGCATGCAAGATTGAAACCGCATCACCATGGGAAGGACCGAGAAATCAGTAAGATAATTGGTGAGCTCTGGAACAAATTAATAGAGCCAGAGAAAGCAGTTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTATCAAGCTGAAATGGAGAATTATAGGGAGAAACTGAAAACAGGCCAGGGTATAGGTGATGCTGTGCCGCTACAACAACAAATTCCTGATAAGGATATGATGGATGCCGACTTGAAAGTGGATGAATCTGAGGGAGTAGAATTTCCTCAGACACCAGCTGAGAGCAGTTCTAGTGAAAGTGGCTGCGAAGTTGATAAAGGTACAGAGCATAATTTGGACGTGAATGCATCTCCTGGAATGATAGGAGTGGGTGCTGAATCTAGCTATCTGGGTGGGAGAAACCATCGAAGGAGAAAGAAGGGAATGATGATGGAGATCAACATGCTCAAAAGATGGATGAGAGCTCAAGCATGA 1293 0.4323 MASTSDASKTSFPVTEAASNFYLYPAPLAKFDDIAGDPRLFLYTLEKLNNRLGSKFMIPIIGGKELDLHRLFLQVTSRGGIEKIIRERRWKEITALFKFPSTATNASFVLRKYYGQLLYHYEQLYYLKAPGWTHIPSDALQSSLHVPVPTRIQPILHPPVNASELPEATSASSAGTPVIGVIDGKFESGYLVTVTLGSEKLKGVLYQAPQNPALPTMLQHSSVPVNYSNTSSAALGVHRHRRKKSEIKKRDPDHPKPNRSGYNFFFAEQHARLKPHHHGKDREISKIIGELWNKLIEPEKAVYQEKALKDKERYQAEMENYREKLKTGQGIGDAVPLQQQIPDKDMMDADLKVDESEGVEFPQTPAESSSSESGCEVDKGTEHNLDVNASPGMIGVGAESSYLGGRNHRRRKKGMMMEINMLKRWMRAQA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4563g00005 430 MobiDBLite consensus disorder prediction 357 392 - -
Pral4563g00005 430 Gene3D High mobility group box domain 239 332 IPR036910 -
Pral4563g00005 430 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Pral4563g00005 430 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Pral4563g00005 430 FunFam High mobility group B protein 15 237 332 - -
Pral4563g00005 430 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Pral4563g00005 430 CDD HMG-box_AtHMGB9-like 255 321 - -
Pral4563g00005 430 SMART bright_3 36 127 IPR001606 GO:0003677
Pral4563g00005 430 SUPERFAMILY HMG-box 242 326 IPR036910 -
Pral4563g00005 430 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Pral4563g00005 430 MobiDBLite consensus disorder prediction 234 259 - -
Pral4563g00005 430 SUPERFAMILY ARID-like 37 129 IPR036431 GO:0003677
Pral4563g00005 430 Gene3D - 28 131 IPR036431 GO:0003677
Pral4563g00005 430 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 372 - -
Pral4563g00005 430 SMART hmgende2 254 323 IPR009071 -
Pral4563g00005 430 SMART ARID_2 32 122 - -
Pral4563g00005 430 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
Pral4563g00005 430 Coils Coil 304 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4563g00005 Pral-Chr4563 26398 32359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4563g00005 1 353 ARID Transcription Factor Family AT1G04880 55.795 8.41e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pral4563g00005 ARID 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4563g00005 - - pcin:129308526 645.58