Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4563g00004 ATGGCATCAACATCGGATGCCTCCAAGACTTCATTCCCTGTGACAGAGGCAGCTTCGAACTTCTATCTGTATCCTGCTCCTCTTGCAAAATTTGATGATATCGCGGGTGATCCCAGGCTCTTTTTGTACACATTGGAGAAGCTCAACAATCGTCTGGGTTCCAAGTTCATGATACCCATTATAGGGGGAAAAGAACTAGATTTGCATCGGCTTTTCTTGCAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTCTTTTCAAATTTCCATCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGGTCAATTGCTTTACCACTATGAACAATTATACTATTTGAAGGCCCCAGGATGGACCCATATACCTTCTGATGCTTTGCAGAGTTCATTGCATGTTCCAGTTCCTACAAGAATACAGCCGATTTTGCATCCCCCAGTTAATGCCTCTGAATTGCCTGAAGCAACTTCAGCTTCTTCTGCAGGGACTCCAGTGATTGGGGTGATTGATGGAAAATTCGAAAGTGGGTATCTTGTTACTGTCACACTGGGTTCAGAGAAACTTAAAGGTGTGCTATATCAGGCTCCACAAAACCCTGCGTTGCCAACAATGCTGCAACATAGTAGTGTTCCAGTTAATTACAGCAATACCTCATCAGCTGCTTTGGGTGTCCATCGTCACCGACAGCAGCATGCAAGATTGAAACCGCATCACCATGGGAAGGACCGAGAAATCAGTAAGATAATTGGTGAGCTCTGGAACAAATTAATAGAGCCAGAGAAAGCAGTTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTATCAAGCTGAAATGGAGAATTATAGGGAGAAACTGAAAACAGGCCAGGGTATAGGTGATGCTGTGCCGCTACAACAACAAATTCCTGATAAGGATATGATGGATGCCGACTTGAAAGTGGATGAATCTGAGGGAGTAGAATTTCCTCAGACACCAGCTGAGAGCAGTTCTAGTGAAAGTGGCTGCGAAGTTGATAAAGGTACAGAGCATAATTTGGACGTGAATGCATCTCCTGGAATGATAGGAGTGGGTGCTGAATCTAGCTATCTGGGTGGGAGAAACCATCGAAGGAGAAAGAAGGGAATGATGATGGAGATCAACATGCTCAAAAGATGGATGAGAGCTCAAGCATGA 1215 0.437 MASTSDASKTSFPVTEAASNFYLYPAPLAKFDDIAGDPRLFLYTLEKLNNRLGSKFMIPIIGGKELDLHRLFLQVTSRGGIEKIIRERRWKEITALFKFPSTATNASFVLRKYYGQLLYHYEQLYYLKAPGWTHIPSDALQSSLHVPVPTRIQPILHPPVNASELPEATSASSAGTPVIGVIDGKFESGYLVTVTLGSEKLKGVLYQAPQNPALPTMLQHSSVPVNYSNTSSAALGVHRHRQQHARLKPHHHGKDREISKIIGELWNKLIEPEKAVYQEKALKDKERYQAEMENYREKLKTGQGIGDAVPLQQQIPDKDMMDADLKVDESEGVEFPQTPAESSSSESGCEVDKGTEHNLDVNASPGMIGVGAESSYLGGRNHRRRKKGMMMEINMLKRWMRAQA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4563g00004 404 Gene3D High mobility group box domain 230 305 IPR036910 -
Pral4563g00004 404 SUPERFAMILY ARID-like 37 129 IPR036431 GO:0003677
Pral4563g00004 404 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 346 - -
Pral4563g00004 404 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Pral4563g00004 404 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 240 296 IPR009071 -
Pral4563g00004 404 SMART hmgende2 225 297 IPR009071 -
Pral4563g00004 404 Coils Coil 278 305 - -
Pral4563g00004 404 CDD HMG-box_AtHMGB9-like 242 295 - -
Pral4563g00004 404 SMART bright_3 36 127 IPR001606 GO:0003677
Pral4563g00004 404 MobiDBLite consensus disorder prediction 331 366 - -
Pral4563g00004 404 Pfam HMG (high mobility group) box 242 296 IPR009071 -
Pral4563g00004 404 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Pral4563g00004 404 SUPERFAMILY HMG-box 249 300 IPR036910 -
Pral4563g00004 404 SMART ARID_2 32 122 - -
Pral4563g00004 404 Gene3D - 28 131 IPR036431 GO:0003677
Pral4563g00004 404 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4563g00004 Pral-Chr4563 26398 32359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4563g00004 1 327 ARID Transcription Factor Family AT1G04880 48.248 5.82e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pral4563g00004 ARID 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4563g00004 - - pcin:129308526 577.4