Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4561g00193 ATGTACCCTTCTTCCTCATCGTCCTCCTCCCAGTCCCAAAGCGGCTTAACCCGCTACGGTTCCGCCCCGGGATCACTCCTCACCAACGCCGTCGATGCCGTTATCAGAGGAGCTGACCGCGAATTCTCCACTTCTGCCGTCGGATCACGCCCTCCGGTCACCCATTTCTTCTCTGGCGAATCCTCCGAGCCCTCCTGCAAGGTCAACTCATCCTCCGATCCAAAAGACAAACCTCCCAGCATCGGATTGCAGAGATCGTATGGTCTCCATGACGGAGCCGCCGTCGGCTTCGGTATCTCCTCTTCGGCTTTGCTTCGTCAGAGAAGCTCGCCAGCTGGCTTCCTCAGCAATCTCACTGCTACTCCTCCTGATAATGGAGGTTTCTCAATCTCAAGGGGCAGTGGAAGCTATAGCGCACAAGGCGGCTCTAATAGTGGCCATGGAATAGCAAGGCTAAAATCTCAATTGAGCTTCACAGGGCAAGAATCCCTTTCTCAGATAGCGGAGATGAGCGAACACGTTGATGGCATCAATTCTGACGATGGCCACCATAGAGCTACACATTCTTATGCCACAACCAGCTTTGGAATTGACACGTGGGATGGTTCAAACTCCATTGTGTTTTCTGCTCCCCCTAGTAAACGGGCTAAGAATATAGATGGAGACATTCTGAACTGTCTTAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACAGTGGAAAAGCTACTTCATATTCCTGAAGATTCTGTCCCCTGTAAAATTCGTGCTAAGCGAGGCTGTGCTACTCATCCAAGAAGCATTGCAGAACGGGAGAGAAGAACTAGAATTAGTGGGAAGCTGAAGAAGTTGCAAGAGCTGGTGCCTAATATGGACAAGCAAACAAGCTATGCGGACATGCTGGATTTGGCTGTTCAACATATCAAAGGTCTACAAACTCAAGTACAGGAGCTCCACCAAGAACTCGAGAATTGCACCTGTGGATGTAAACAAAGCTCATAG 1020 0.498 MYPSSSSSSSQSQSGLTRYGSAPGSLLTNAVDAVIRGADREFSTSAVGSRPPVTHFFSGESSEPSCKVNSSSDPKDKPPSIGLQRSYGLHDGAAVGFGISSSALLRQRSSPAGFLSNLTATPPDNGGFSISRGSGSYSAQGGSNSGHGIARLKSQLSFTGQESLSQIAEMSEHVDGINSDDGHHRATHSYATTSFGIDTWDGSNSIVFSAPPSKRAKNIDGDILNCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQTQVQELHQELENCTCGCKQSS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4561g00193 339 SMART finulus 273 323 IPR011598 GO:0046983
Pral4561g00193 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Pral4561g00193 339 MobiDBLite consensus disorder prediction 47 77 - -
Pral4561g00193 339 Coils Coil 307 327 - -
Pral4561g00193 339 Gene3D - 268 337 IPR036638 GO:0046983
Pral4561g00193 339 Pfam Helix-loop-helix DNA-binding domain 272 318 IPR011598 GO:0046983
Pral4561g00193 339 MobiDBLite consensus disorder prediction 1 24 - -
Pral4561g00193 339 FunFam Transcription factor bHLH130 family 268 337 - -
Pral4561g00193 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 329 - -
Pral4561g00193 339 MobiDBLite consensus disorder prediction 115 148 - -
Pral4561g00193 339 CDD bHLH_AtbHLH_like 272 324 IPR045239 -
Pral4561g00193 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 332 IPR036638 GO:0046983
Pral4561g00193 339 MobiDBLite consensus disorder prediction 41 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4561g00193 Pral-Chr4561 1004108 1010033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4561g00193 15 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 49.157 3.31e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4561g00193 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4561g00193 - - qsa:O6P43_023660 479.944