Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4561g00186 ATGGCGTTTGTTCCCCAACCCCAAGAAGCCGAAGAAGACACCAACGTCGACATTCACACCACCCACGGCACTCCCATTCGTTATCTTCCTCTCGATCATCTTTATTCTGCTACATCCCCCTGTCGTGTCAGCGCCAGTGGTTCTTCCAACGTCATGTCGAAGAAGGTCAAGGCCCGCAAGCTCAATCTTACCCCCTTTGAGTTTGACCCTGATCTTAAGAACTCACTTGCTAAGCCCCCTCTTCTTCACGTCTACTCTCGCCGCCATAAGAGGCCTCGGCATTCCACGGAGAGCTTGTCCTTTTTTGATTCTTTGATGCGCCAGGGTGGACCCACCTCGGATATTTGCAAAATTGATGATTCTGGGGAGCACCGGGAGAACGACAATTCTGAGGCTGGGACACTGAAGAAGAAGAGAAAAGCTGGAAGCGCGGAATTGGTGAATTTGGGGGTGGATTTGAGCGCATTAGGTACTCTTGACGTTCCTCGGTTGAGGGATTGTCGTGGTCATAATGTTACTAATATCAGTGATTGTGACTCTAGCATGAAGAAAAATCGTGCCCCCTTGGAAAATTTTCCAAAGCTATTGCCTGCATCCCGCACCGTAAAGAGATGGGTCAGGTTGACTTTTGATAATGCTGATCCTGAGACATTGGTTGGACTACGATGCAAGGTTTATTGGCCCATGGATTTGAAATGGTACATTGGTCGAGTCAGAGGTTATGATTCAGAAACTAAGATACATCATGTCAAATATGAAGATGGTGATGAAGAAAACTTGATTCTTTCTAATGAGAAAATAAGGTTTCATGTTTCCCGTGAGGAGCTGAAGCAGTTAAACTTGAGTAGTTGTAACATTTCTGATTATGATGCGGAAGAGCTGCTTGCCTTGGCTGCTAGTTTAGACAACTGTCAAGAGTTTGAACCTGGTGAAGTTGTATGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTCTTGTTATGGATGAATCGCTTGCTGGGAATTGTAAAGGTTTAAAATTGTTTTCGGGTGGAAGATCCGTTCCTGTGCAATTTTTTGGCACACACGACTTTGCAAGGGTTAGACTGCAGCAGGTGAAATCATTTCTCACTGGGCTTCTTTCTCGTCTACACTTGAAGTGCAAGAAACCTCATTTTTTTGAGGGACTAGAAGAGGCAAAAATCTATTTAAGCAAACAGAAGCTTCCTTCTGAAATGCTGCGCTCACAGAAAAGATGCAAGGCTGATGACTGCAAAAATGTGCATGGAGAGGACGAAGGATGTACAGATTCAGGTGAAGATTGTTTAGACGATGGATGGGCCCAGACAGCATTGAAAAACATTGAAACTTCTCCTTATGTAGTAGGAGACTTGAAAATTTTAAGCCTGGGAAGAATTGTGCACGATTCTGCTAGTTTTCGAGATGGAAGTATAATCTGGCCAGAGGGCTACATGGCAGTGAGGGAGTTTACTTCAATCACTGACCCAAAAGTTTGCACATCATATAAGATGGAGGTGTTGAGAGATCCTGAGTCAAAGGTTCGACCGCTTTTTAGGGTGACACTGGATGGTGGAGAGCAGTTCAATGGTCCCACAGCATCAGCTTGCTGGAATAAAATATACAAACGGATAAAAAAATTGGAAAAGGGTGCTTCTGATGTTTCCTCTGCAGATGGTAGGCTTGTTAGGGACTATAAATCAGGAGCTGATATGTTTGGTTTTTCGAATCCTAAAGTTGCTAAACTTATACAGGGATTATATAAATGCAGCACCTCTTCCAGAAACTTAATGTGCAAGATAGGTTCTGGTAGATATGGTGATCTGCCTGTTGGTTATAGACAGGTTCATATTGATTGGTTTGACCTTGATAAGTGCAATGTGTGTCACATGGATGAGGAATACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCCAGATGTTATGGAGAAATAGAACCTTCTAATGGAGTGCTATGGTTGTGTAACCTATGTCGTTCTGGTGCTCCCTCCCCCCCACCACCTTGCTGCTTATGTCCACTGATAGGAGGTGCAATGAAGCCTACAACAGATGGTCGATGGGCTCATTTGGCATGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGCGGATGGAGCCTATTGATGGGATAAGTAGAATCAGCAAGGACCGCTGGAAATTGTTATGCAGCATTTGTGGGGTGCCTTATGGTGCTTGCATCCAGTGTTCAAATAATTCTTGTAGAGTGGCATATCATCCGCTTTGTGCACGGGCGGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTGCTCTCTTTCTGCAAGAAACATAGGCATCCATCAAATGATCATTCTATTGCTGATGAACGCATTGGGCGAGTTACCAGTCAATGTTCAGAATATAAACCGCCACCCAACCCATCTGGTTGTGCTCGCAGTGAACCATACAATAACTTTGGCAGGAGAGGGCGAAAAGAACCCGAAGCGCTTGCAGCAGCATCCTTGAAACGCTTGTTTGTAGAAAATCAATCTTATTTGGTTGGTGGACATTGCCAGCATGGGGTGTCGGACAATGTAGATCCATCTGGAAGAGGGGTTTGCTCTAAATTCTTTTGCAGCCAACAAAGGCTGAAGACCTCTCTGGTTGATGCTTCAAATGGCATACTTTCTATTGCTGAGAAATATAAATACATGAGGGAAACCTTTAGGAAAAGGCTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGGGACATGGTGATTGAATACACTGGTGAACTTGTTAGGCCTTCCATAGCTGACCGGAGAGAGCATTTTATATATAATTCTATGGTGGGTGCAGGAACATACATGTTTCGGATTGATGATGAACGAGTCATCGATGCTACCAGAGCAGGAAGCATTGCTCATTTGATTAATCATTCTTGTGCACCAAATTGCTACTCAAGAGTTATCAGTGTCAACGGTGACGAGCATATAATAATCTTTGCAAAGCGGGACATTAAACAATGGGAGGAGCTCACATATGATTATAGGTTTTTTTCAATTGATGAACGATTAGCCTGTTATTGTGGCTTCCCAAGATGCCGAGGTGTTGTAAATGATACAGAGGCAGAAGAGCGAGCTGCAAAGCTATATGTACCGCGGAGTGAATTAATAGATTGGGGAGGAGAATAA 3279 0.441 MAFVPQPQEAEEDTNVDIHTTHGTPIRYLPLDHLYSATSPCRVSASGSSNVMSKKVKARKLNLTPFEFDPDLKNSLAKPPLLHVYSRRHKRPRHSTESLSFFDSLMRQGGPTSDICKIDDSGEHRENDNSEAGTLKKKRKAGSAELVNLGVDLSALGTLDVPRLRDCRGHNVTNISDCDSSMKKNRAPLENFPKLLPASRTVKRWVRLTFDNADPETLVGLRCKVYWPMDLKWYIGRVRGYDSETKIHHVKYEDGDEENLILSNEKIRFHVSREELKQLNLSSCNISDYDAEELLALAASLDNCQEFEPGEVVWAKLTGHAMWPALVMDESLAGNCKGLKLFSGGRSVPVQFFGTHDFARVRLQQVKSFLTGLLSRLHLKCKKPHFFEGLEEAKIYLSKQKLPSEMLRSQKRCKADDCKNVHGEDEGCTDSGEDCLDDGWAQTALKNIETSPYVVGDLKILSLGRIVHDSASFRDGSIIWPEGYMAVREFTSITDPKVCTSYKMEVLRDPESKVRPLFRVTLDGGEQFNGPTASACWNKIYKRIKKLEKGASDVSSADGRLVRDYKSGADMFGFSNPKVAKLIQGLYKCSTSSRNLMCKIGSGRYGDLPVGYRQVHIDWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGEIEPSNGVLWLCNLCRSGAPSPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGISRISKDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRHPSNDHSIADERIGRVTSQCSEYKPPPNPSGCARSEPYNNFGRRGRKEPEALAAASLKRLFVENQSYLVGGHCQHGVSDNVDPSGRGVCSKFFCSQQRLKTSLVDASNGILSIAEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRREHFIYNSMVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPRCRGVVNDTEAEERAAKLYVPRSELIDWGGE 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4561g00186 1092 CDD Tudor_Agenet_AtEML-like 219 269 - -
Pral4561g00186 1092 FunFam Histone-lysine N-methyltransferase 861 1085 - -
Pral4561g00186 1092 SMART fyrc_3 517 597 IPR003889 GO:0005634
Pral4561g00186 1092 FunFam Histone-lysine N-methyltransferase 676 804 - -
Pral4561g00186 1092 CDD ePHD_ATX1_2_like 687 801 IPR041956 -
Pral4561g00186 1092 ProSiteProfiles Post-SET domain profile. 1052 1068 IPR003616 -
Pral4561g00186 1092 Gene3D - 216 269 - -
Pral4561g00186 1092 ProSiteProfiles Extended PHD (ePHD) domain profile. 678 802 IPR034732 -
Pral4561g00186 1092 Pfam F/Y rich C-terminus 515 590 IPR003889 GO:0005634
Pral4561g00186 1092 ProSiteProfiles FYR domain FYRC motif profile. 513 599 IPR003889 GO:0005634
Pral4561g00186 1092 Gene3D SET domain 856 1081 IPR046341 -
Pral4561g00186 1092 ProSiteProfiles Zinc finger PHD-type profile. 622 673 IPR019787 -
Pral4561g00186 1092 SMART set_7 928 1052 IPR001214 GO:0005515
Pral4561g00186 1092 CDD PHD_ATX1_2_like 624 670 IPR042010 -
Pral4561g00186 1092 ProSiteProfiles SET domain profile. 928 1046 IPR001214 GO:0005515
Pral4561g00186 1092 Pfam PHD-zinc-finger like domain 680 801 - -
Pral4561g00186 1092 Gene3D - 298 407 - -
Pral4561g00186 1092 ProSiteProfiles PWWP domain profile. 309 372 IPR000313 -
Pral4561g00186 1092 SUPERFAMILY Tudor/PWWP/MBT 217 260 - -
Pral4561g00186 1092 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 675 IPR013083 -
Pral4561g00186 1092 Pfam PHD-finger 637 671 - -
Pral4561g00186 1092 SMART PWWP_4 307 371 IPR000313 -
Pral4561g00186 1092 CDD PWWP_AtATX1-like 308 403 - -
Pral4561g00186 1092 SMART PHD_3 624 671 IPR001965 -
Pral4561g00186 1092 SMART PHD_3 736 802 IPR001965 -
Pral4561g00186 1092 Pfam PWWP domain 310 396 IPR000313 -
Pral4561g00186 1092 PANTHER PHD FINGER PROTEINS 39 1082 - -
Pral4561g00186 1092 SUPERFAMILY FYVE/PHD zinc finger 615 689 IPR011011 -
Pral4561g00186 1092 Pfam F/Y-rich N-terminus 456 506 IPR003888 GO:0005634
Pral4561g00186 1092 SUPERFAMILY Tudor/PWWP/MBT 303 405 - -
Pral4561g00186 1092 MobiDBLite consensus disorder prediction 113 139 - -
Pral4561g00186 1092 ProSiteProfiles FYR domain FYRN motif profile. 450 509 IPR003888 GO:0005634
Pral4561g00186 1092 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 676 804 IPR013083 -
Pral4561g00186 1092 MobiDBLite consensus disorder prediction 117 139 - -
Pral4561g00186 1092 ProSitePatterns Zinc finger PHD-type signature. 625 670 IPR019786 -
Pral4561g00186 1092 Pfam SET domain 939 1045 IPR001214 GO:0005515
Pral4561g00186 1092 CDD SET_SETD1-like 916 1064 - -
Pral4561g00186 1092 SMART TUDOR_7 215 273 IPR002999 -
Pral4561g00186 1092 Gene3D - 451 591 - -
Pral4561g00186 1092 SUPERFAMILY SET domain 924 1065 IPR046341 -
Pral4561g00186 1092 SMART fyrn_3 465 509 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4561g00186 Pral-Chr4561 959457 974565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4561g00186 625 772 C2H2 Transcription Factor Family AT3G14740 39.735 4.20e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4561g00186 zf-HC5HC2H_2 1.9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4561g00186 - - gmx:100808923 1682.15