Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4561g00130 ATGGACGGAGCGCCATCTTCGTCCGCCGGCTCCGGCGCTGGAGGCGGCGGAACTGGAGGTCCGGCACCTTTTCTTATCAAGACCTATGAAATGGTCGACGATTCTTCCACCGACGATATTGTATCGTGGAGCTCAACCAACAACAGCTTCGTCGTCTGGAATCCCCCTGAGTTCGCTCGTCATCTACTTCCTACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACCTACGGATTCCGGAAAATACATCCTGAGCGATGGGAGTTCGCGAATGATGATTTTGTGAAAGATCAAAAGCATCTTCTCAAGAATATTCACCGCAGGAAACCTATCCACAGTCACAGCCATCCTCCAGGCTCTGTTGTAGACCCAGAACGGGCAGCATTTGAGGAAGAAATTGAGAAACTTGCGCGTGAGAAATCTGCTCTTGAATCCAACATTGTCAGATTTAAACAACACTCAGCTGTGAAGCTTCAGCTGGAAGATCTATTGCAGCGATTAGACAACATGGAGAAGAGACAGAAGAATTTGCTGAACTACTTAGAAAAGGCTCTTCAGAATCCTTCTTTTGTTGAACATCTTTCACGGAAACTTGATTGCATGGATTTATCAGCATATAATAAGAAAAGAAGATTGCCTCATGTTGATCACTTGCAGCCAGTTGGTGAAAATAACTTGGTTGAAAATCATAGCAATTTTAGAACAGAATTTGGCACTGTTTTCCACCAAGATTTCTCAAATAAACTCAGGTTGGAGTTATCGCCAGCCGTTTCAGATATGAATTTGGTATCACGTAGCACTCAGAGTTCCAATGAAGACGGGGAAAATCCACAGAAGAGGCTATCTGAAGGAACGCCCAAAGGAGTGCAGACAAGAACAACTCTTGCATTCGCACCTGAAACATTAGAGCTAGCAGATACTGGAGCATCTTTTTCGTTCAAGATGGATTCATGTCCATCACAGCGAGCAACAACTGCTGAGAGCACAAAACTGCACTCTTTGCATCTAAGTAATGAAGAAGGTGACAGTCATATATCCTGCCATCTAAATTTGACTCTGGCATCTTCTTCTTTGCAAGTCAACAGAAATCCATACTCGGCTAGATCACCGCAGATAGACTGTCAGGAAATAGGCAAATTGGCAGAATCAAGATTTTACGAAAACGATAAAGATTCTAATAGTGGAGTTCCTTCAACGAGAAATCCAGCTCATGAGGTTGCCAATTTAACTTCCTCACAGTCAAAGGAGACTCCGAGCAGCAACCAAGCGCCACCGGCTGCTCCAGCCAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCCGGTTGTTCAGACAATGAAGAGGCAATATCCAACTATAGAGCAAATCCATATGAAGAGCAAGACGAGGGCCGGTCAATTCCTGGAATCTCCAGAAATGTCAAGAATATGGATCAGCTCACACTTTGA 1473 0.444 MDGAPSSSAGSGAGGGGTGGPAPFLIKTYEMVDDSSTDDIVSWSSTNNSFVVWNPPEFARHLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIEKLAREKSALESNIVRFKQHSAVKLQLEDLLQRLDNMEKRQKNLLNYLEKALQNPSFVEHLSRKLDCMDLSAYNKKRRLPHVDHLQPVGENNLVENHSNFRTEFGTVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGENPQKRLSEGTPKGVQTRTTLAFAPETLELADTGASFSFKMDSCPSQRATTAESTKLHSLHLSNEEGDSHISCHLNLTLASSSLQVNRNPYSARSPQIDCQEIGKLAESRFYENDKDSNSGVPSTRNPAHEVANLTSSQSKETPSSNQAPPAAPARVNDVFWEQFLTERPGCSDNEEAISNYRANPYEEQDEGRSIPGISRNVKNMDQLTL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4561g00130 490 Gene3D - 19 114 IPR036388 -
Pral4561g00130 490 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4561g00130 490 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4561g00130 490 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4561g00130 490 MobiDBLite consensus disorder prediction 391 432 - -
Pral4561g00130 490 MobiDBLite consensus disorder prediction 395 431 - -
Pral4561g00130 490 Coils Coil 131 192 - -
Pral4561g00130 490 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4561g00130 490 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4561g00130 490 FunFam Heat shock transcription factor 1 17 114 - -
Pral4561g00130 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 270 IPR027725 -
Pral4561g00130 490 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Pral4561g00130 490 MobiDBLite consensus disorder prediction 268 297 - -
Pral4561g00130 490 MobiDBLite consensus disorder prediction 448 490 - -
Pral4561g00130 490 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4561g00130 Pral-Chr4561 613369 616747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4561g00130 1 490 HSF AT4G13980 55.242 9.00e-173 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral4561g00130 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4561g00130 K09419 - gmx:100786408 762.681