Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4561g00086 ATGTCTAACGAGGTTGTCACTGCAACCAATGACCAATCTGATGAAATGGTTGTTCCTGAGGTTGACAAAAAGGTGCTTGTGGAACTTGAATCAATGGGTTTTTCAACTGCGCGTGCGACACGTGCACTTCATTATTCTGGTAACACTAGCCTTGAGGCTGCTGTGAATTGGGTAGTAGAGCATGAGAATGACCCTGCCATAGATCAGATGCCCTTGGTACCTGCAAACACCAAAGTTGAGGCTCCTAAACCTTCTCTTACACCAGAACAACTGAAAGCTAAACAGCAGGAACTCAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAAAATGGAGAGAGAAAAAGAAAAGGAGAGAATTCGTATAGGAAAGGAGTTACTGGAAGCAAAAAGAATTGAAGAGGAGAATGAGAGAAAACGGCTGCTGGCTCTACGAAAAGCTGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAGGCAGAAATTGGAGGAAGACAAGGCTGAAAGAAGGCGAAGACTTGGATTACCTCCTGAAGAACCATCGGCTCCCAAACCATCAAATGTCGTGGAGGAGAAAAAGAGTTCATTGCCAGTTCGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCCTGCGCACTCTCAAGCAGAACCACAAGGATGATGATGCAAGAGTAAAGAGAGCATTCCAGACACTACTAACTTATGTGGGGAATGTTGCCAAAAGTCCCGACGAGGAAAAATTTAGAAGAATAAGACTTAGCAACCAAACTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGGGGAATTGATTTCCTGGAAATTTGTGGGTTTGAGAAAATCGAAGGGGGAGAGTTTCTGTTTTTGCCTCGGGACAAGGTTGACAAGGCAGTCCTCAATTCTGCTGGGTCCGAACTCGACTCTGCAATCAAAAATCCCTTTTTTGGAGTTCTTTAG 963 0.4496 MSNEVVTATNDQSDEMVVPEVDKKVLVELESMGFSTARATRALHYSGNTSLEAAVNWVVEHENDPAIDQMPLVPANTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKKMEREKEKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIRQKLEEDKAERRRRLGLPPEEPSAPKPSNVVEEKKSSLPVRPATKAEQMRECLRTLKQNHKDDDARVKRAFQTLLTYVGNVAKSPDEEKFRRIRLSNQTFQERVGALKGGIDFLEICGFEKIEGGEFLFLPRDKVDKAVLNSAGSELDSAIKNPFFGVL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4561g00086 320 Coils Coil 126 171 - -
Pral4561g00086 320 SMART uba_6 22 60 IPR015940 -
Pral4561g00086 320 Gene3D - 206 310 - -
Pral4561g00086 320 CDD UBA_PUB_plant 20 68 - -
Pral4561g00086 320 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 20 61 IPR015940 -
Pral4561g00086 320 SUPERFAMILY UBA-like 8 74 IPR009060 GO:0005515
Pral4561g00086 320 CDD PUB_UBA_plant 214 320 - -
Pral4561g00086 320 SMART PGNneu 230 293 - -
Pral4561g00086 320 Coils Coil 91 123 - -
Pral4561g00086 320 Gene3D - 22 67 - -
Pral4561g00086 320 MobiDBLite consensus disorder prediction 79 120 - -
Pral4561g00086 320 PANTHER F13M7.16 PROTEIN 8 320 - -
Pral4561g00086 320 MobiDBLite consensus disorder prediction 164 180 - -
Pral4561g00086 320 SUPERFAMILY PUG domain-like 203 316 IPR036339 -
Pral4561g00086 320 MobiDBLite consensus disorder prediction 164 208 - -
Pral4561g00086 320 Pfam UBA/TS-N domain 28 57 IPR015940 -
Pral4561g00086 320 MobiDBLite consensus disorder prediction 93 120 - -
Pral4561g00086 320 Pfam PUB domain 227 298 IPR018997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4561g00086 Pral-Chr4561 381267 387522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4561g00086 7 320 C2H2 Transcription Factor Family AT1G04850 77.603 2.47e-152 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4561g00086 K24348 - gmx:100779218 459.144