Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4561g00085 ATGGCTGGCGTATCCCTCCAGTGCGGTGACTGTGGAGCGCTATTGAGGTCCGTACAAGAAGCTCAGGAGCACGCAGAGCTCACCTCCCACTCCAACTTCTCCGAATCGACTGAAGCTGTTCTCAACCTTGTTTGCACCACTTGTGGCAAGCCATGCCGATCCAAGACCGAGAGTGATTTGCATGCAAAAAGAACTGGGCATAGTGAATTTGCTGATAAGACATCTGAGGCGGCGAAACCAATAAGTTTGGAGGCTCCAAAGGTGGATGCAATGTCTAACGAGGTTGTCACTGCAACCAATGACCAATCTGATGAAATGGTTGTTCCTGAGGTTGACAAAAAGGTGCTTGTGGAACTTGAATCAATGGGTTTTTCAACTGCGCGTGCGACACGTGCACTTCATTATTCTGGTAACACTAGCCTTGAGGCTGCTGTGAATTGGGTAGTAGAGCATGAGAATGACCCTGCCATAGATCAGATGCCCTTGGTACCTGCAAACACCAAAGTTGAGGCTCCTAAACCTTCTCTTACACCAGAACAACTGAAAGCTAAACAGCAGGAACTCAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAAAATGGAGAGAGAAAAAGAAAAGGAGAGAATTCGTATAGGAAAGGAGTTACTGGAAGCAAAAAGAATTGAAGAGGAGAATGAGAGAAAACGGCTGCTGGCTCTACGAAAAGCTGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAGGCAGAAATTGGAGGAAGACAAGGCTGAAAGAAGGCGAAGACTTGGATTACCTCCTGAAGAACCATCGGCTCCCAAACCATCAAATGTCGTGGAGGAGAAAAAGAGTTCATTGCCAGTTCGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCCTGCGCACTCTCAAGCAGAACCACAAGGATGATGATGCAAGAGTAAAGAGAGCATTCCAGACACTACTAACTTATGTGGGGAATGTTGCCAAAAGTCCCGACGAGGAAAAATTTAGAAGAATAAGACTTAGCAACCAAACTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGGGGAATTGATTTCCTGGAAATTTGTGGGTTTGAGAAAATCGAAGGGGGAGAGTTTCTGTTTTTGCCTCGGGACAAGGTTGACAAGGCAGTCCTCAATTCTGCTGGGTCCGAACTCGACTCTGCAATCAAAAATCCCTTTTTTGGAGTTCTTTAG 1233 0.4647 MAGVSLQCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTESDLHAKRTGHSEFADKTSEAAKPISLEAPKVDAMSNEVVTATNDQSDEMVVPEVDKKVLVELESMGFSTARATRALHYSGNTSLEAAVNWVVEHENDPAIDQMPLVPANTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKKMEREKEKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIRQKLEEDKAERRRRLGLPPEEPSAPKPSNVVEEKKSSLPVRPATKAEQMRECLRTLKQNHKDDDARVKRAFQTLLTYVGNVAKSPDEEKFRRIRLSNQTFQERVGALKGGIDFLEICGFEKIEGGEFLFLPRDKVDKAVLNSAGSELDSAIKNPFFGVL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4561g00085 410 CDD PUB_UBA_plant 304 410 - -
Pral4561g00085 410 Coils Coil 181 213 - -
Pral4561g00085 410 MobiDBLite consensus disorder prediction 254 270 - -
Pral4561g00085 410 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Pral4561g00085 410 MobiDBLite consensus disorder prediction 183 210 - -
Pral4561g00085 410 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Pral4561g00085 410 MobiDBLite consensus disorder prediction 168 210 - -
Pral4561g00085 410 Gene3D - 112 157 - -
Pral4561g00085 410 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515
Pral4561g00085 410 Coils Coil 216 261 - -
Pral4561g00085 410 MobiDBLite consensus disorder prediction 254 298 - -
Pral4561g00085 410 SUPERFAMILY PUG domain-like 294 406 IPR036339 -
Pral4561g00085 410 Pfam PUB domain 317 388 IPR018997 -
Pral4561g00085 410 Pfam UBA/TS-N domain 118 147 IPR015940 -
Pral4561g00085 410 Gene3D - 297 400 - -
Pral4561g00085 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Pral4561g00085 410 SMART uba_6 112 150 IPR015940 -
Pral4561g00085 410 CDD UBA_PUB_plant 110 158 - -
Pral4561g00085 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Pral4561g00085 410 SMART PGNneu 320 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4561g00085 Pral-Chr4561 381267 388312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4561g00085 97 410 C2H2 Transcription Factor Family AT1G04850 77.603 3.57e-151 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4561g00085 K24348 - gmx:100794687 615.92