Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4561g00080 ATGGGGATCAAGGCTAAGAAGGCAATGAAGAAGAGTCTGAAAAAGGCCGCGGCTAAGGTAGCAGTTCCGAGCAAGAAAACAGAGCGCGACTTCTTGCCATTGGAAGGTGGTCCTGCACGCAAACTTCCTGAACATAAATTGCTAGAGAACACGGCCACTGTTTTATACATTGGTCGGATACCACATGGGTTCTATGAGAAGGAGATGGAAGGTTTTTTTGGACAATTTGGTACCATCAAGAGGTTGAGGATTGCAAGAAATAAAAAGACTGGAAAATCTAGACATTTTGGCTTCATACAATTTGAATCTCCTGAGGTGGCAAAAATTGTAGCTGAGACCATGCACAATTATCTGCTGCAAGAACATGTTCTGCAGGTTCATCTGATACCTCCCGAGGATGTTCATCCAAAATTATGGAGGGGCTTCAATTTTCAGCACAAGCCATTGGACTCCGTTCAAATTGAAAGAAAGCGGCTTGGCAAGGAAAGAACATTGGAAGAGCAACAAAAGCTGGTTGAAAAGATCATGAAGCATGACAAAAAACGAAGAAAGAGGATAGAGGCTGCTGGAATTGATTATGAATGCCCTGAGATTGTGGGCACCATCCAGCCTGGTCCTAAGAAAATCAAGTTTGAAGACTGA 642 0.433 MGIKAKKAMKKSLKKAAAKVAVPSKKTERDFLPLEGGPARKLPEHKLLENTATVLYIGRIPHGFYEKEMEGFFGQFGTIKRLRIARNKKTGKSRHFGFIQFESPEVAKIVAETMHNYLLQEHVLQVHLIPPEDVHPKLWRGFNFQHKPLDSVQIERKRLGKERTLEEQQKLVEKIMKHDKKRRKRIEAAGIDYECPEIVGTIQPGPKKIKFED 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4561g00080 213 CDD RRM_NIFK_like 54 127 - -
Pral4561g00080 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Pral4561g00080 213 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 7 212 - -
Pral4561g00080 213 Gene3D - 3 128 IPR012677 -
Pral4561g00080 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Pral4561g00080 213 SMART rrm1_1 54 127 IPR000504 GO:0003723
Pral4561g00080 213 SUPERFAMILY RNA-binding domain, RBD 42 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4561g00080 Pral-Chr4561 358631 361744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4561g00080 53 126 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 6.88e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4561g00080 K14838 - gmx:100814276 322.013