Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4561g00041 ATGAGAAAACCCTCATCGGCGTCGTCGCGCCCAGCACAAGCCGCCCCTCCCAATCCATCTGCTAAGACCACACCCTGCTGCAGCAAAGTAGGCATCAAGAGAGGCCCCTGGACTCCTGAGGAAGACGAGCTCCTCTCCAAGTACATCCAGAAAGAGGGAGAGGGCAGGTGGCGAACCCTCCCCAAGAGAGCCGGTCTCCTCCGCTGCGGCAAAAGCTGCCGCCTCCGTTGGATGAACTATCTCCGCCCCTCCGTCAAGCGCGGCCACATCGCCCCCGACGAGGAGGATCTCATCCTCCGCCTCCATCGCCTCCTCGGCAACCGGTGGTCTCTGATAGCGGGCAGGATCCCTGGGAGAACCGATAATGAGATTAAGAACTACTGGAATACCCATCTCAGCAAGAAGCTGATCAGCCAAGGCATTGATCCCCGCACCCACAAGCCCCTCAAGCCTAATACTCACCCATCAACCAGTGCTGCTCCTTGTTCGCATCATCATCTTCATGACCGTAACAACTCATCATCCAACCCCAGCGCTACTACTAAACCTAATCCCGATGACAAACCCCCAATTACTGAGCAGGACCCCAATCCATACTGTCACTCCTTGGATCCATATGATGAAGCATTGGCCCTTGGGGATCTGCCTGCAATCCCCATGTCCAACACCCCCAGCAATCCCAATGAGGAGGAGGACGAGGATATCAACTACTGTGCCGACGATGTTTTCTCCTCTTTCATCAACTCACTGATCAACGACGATGCCTTTTCTGCTCAGCAGCTGCAGCAGCAGGCGCCCCCACCGCCTCCTTGTAGTGGCATCAATGGTGTGGCCTGGGACGAAGATCCCAACAGTATGCCAGCCGATGCAGATGCTGTCCACTAG 885 0.5627 MRKPSSASSRPAQAAPPNPSAKTTPCCSKVGIKRGPWTPEEDELLSKYIQKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLKPNTHPSTSAAPCSHHHLHDRNNSSSNPSATTKPNPDDKPPITEQDPNPYCHSLDPYDEALALGDLPAIPMSNTPSNPNEEEDEDINYCADDVFSSFINSLINDDAFSAQQLQQQAPPPPPCSGINGVAWDEDPNSMPADADAVH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4561g00041 294 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 24 214 - -
Pral4561g00041 294 CDD SANT 36 81 IPR001005 -
Pral4561g00041 294 MobiDBLite consensus disorder prediction 172 187 - -
Pral4561g00041 294 FunFam Myb transcription factor 31 87 - -
Pral4561g00041 294 Pfam Myb-like DNA-binding domain 92 132 IPR001005 -
Pral4561g00041 294 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Pral4561g00041 294 SUPERFAMILY Homeodomain-like 31 128 IPR009057 -
Pral4561g00041 294 FunFam transcription repressor MYB5-like 91 159 - -
Pral4561g00041 294 MobiDBLite consensus disorder prediction 1 34 - -
Pral4561g00041 294 Gene3D - 34 86 - -
Pral4561g00041 294 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Pral4561g00041 294 Gene3D - 91 160 - -
Pral4561g00041 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Pral4561g00041 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Pral4561g00041 294 MobiDBLite consensus disorder prediction 257 294 - -
Pral4561g00041 294 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Pral4561g00041 294 SMART sant 86 134 IPR001005 -
Pral4561g00041 294 SMART sant 33 83 IPR001005 -
Pral4561g00041 294 CDD SANT 92 132 IPR001005 -
Pral4561g00041 294 MobiDBLite consensus disorder prediction 1 25 - -
Pral4561g00041 294 MobiDBLite consensus disorder prediction 141 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4561g00041 Pral-Chr4561 209355 211826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4561g00041 20 253 MYB Transcription Factor Family AT3G13540 57.627 4.84e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4561g00041 Myb_DNA-binding 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4561g00041 K09422 - pvy:116139454 326.635