Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4560g00001 ATGCGTCGGTGGCTTTGTTGTAGTCGTCACGTGGAAGACTCATACCCACCACATGAAAGTGAGCACCTAAAGAGCCCTTATGGCGAAGATGACCAAAGAGACTCAAGAATGTCAGCTCCCGTCAAACATGAAGCACCAAAGTCTGCACCACCACCTATTGAAGTGCCAGCATTATCTTTAGAGGAGCTAAAGGAAAAGACTGACAACTTTGGGTCAAAGGCTTTGATTGGGGAAGGATCTTATGGAAGAGTGTATTATGGAACCTTAAATAATGGAAAAGCTGTTGCTGTCAAAAAGCTTGATGTTTCTTCTGATGACCAATCAAATGTTGATTTTTTGACCCAGGTTTCCATGGTATCAAGATTGAGGCACGAGAATTTTGTTGAGTTGCATGGTTACTGTGTTGAGGGAAATATGCGTGTATTGGCATATGAGTTTGCAACTATGGGCTCACTTCATGACATATTGCATGGTAGAAAGGGAGTTCAAGGGGCACAACCTGGGCCAACTCTTGACTGGATGCAGCGAGTTAGAATTGCAGTAGATGCAGCAAAAGGATTGGAATATTTGCATGAGAAAGTTCAACCATCGATTATACATAGAGATATCAGATCGAGCAATGTACTTATTTTTGAAGATTACAAAGCAAAGATAGCTGATTTTAACCTTTCCAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCTACTCGAGTTTTGGGAACATTTGGTTATCATGCCCCAGAATATGCAATGACTGGCCAATTGACACAAAAAAGTGATGTCTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTCACAGGAAGAAAACCTGTTGATCATACAATGCCTCGTGGACAGCAAAGTCTTGTTACATGGGCTACGCCAAGACTTAGTGAAGATAAAGTTAAACAATGTGTAGACCCCAAATTGAAGGGTGAATATCCCCCCAAAGGGGTTGCTAAGCTTGCCGCTGTTGCAGCACTGTGCGTGCAATACGAATCCGAGTTTAGGCCAAATATGAGCATCGTTGTTAAAGCCCTTCAACCACTTCTGAAGCCTCCTGCTCCTGCCCAAGAATCTTGA 1086 0.4319 MRRWLCCSRHVEDSYPPHESEHLKSPYGEDDQRDSRMSAPVKHEAPKSAPPPIEVPALSLEELKEKTDNFGSKALIGEGSYGRVYYGTLNNGKAVAVKKLDVSSDDQSNVDFLTQVSMVSRLRHENFVELHGYCVEGNMRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWMQRVRIAVDAAKGLEYLHEKVQPSIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKPPAPAQES 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4560g00001 361 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Pral4560g00001 361 SMART tyrkin_6 70 348 IPR020635 GO:0004713|GO:0006468
Pral4560g00001 361 PIRSF ILK 28 356 - -
Pral4560g00001 361 MobiDBLite consensus disorder prediction 13 53 - -
Pral4560g00001 361 SUPERFAMILY Protein kinase-like (PK-like) 48 348 IPR011009 -
Pral4560g00001 361 ProSitePatterns Tyrosine protein kinases specific active-site signature. 198 210 IPR008266 GO:0004672|GO:0006468
Pral4560g00001 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 356 - -
Pral4560g00001 361 MobiDBLite consensus disorder prediction 13 41 - -
Pral4560g00001 361 FunFam PTI1-like tyrosine-protein kinase 3 32 146 - -
Pral4560g00001 361 Gene3D Transferase(Phosphotransferase) domain 1 148 357 - -
Pral4560g00001 361 ProSiteProfiles Protein kinase domain profile. 70 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4560g00001 361 Gene3D Phosphorylase Kinase; domain 1 43 146 - -
Pral4560g00001 361 Pfam Protein tyrosine and serine/threonine kinase 75 348 IPR001245 GO:0004672|GO:0006468
Pral4560g00001 361 FunFam PTI1-like tyrosine-protein kinase 3 148 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4560g00001 Pral-Chr4560 17836 32237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4560g00001 48 349 Receptor kinase-like Gene Family AT4G02010 49.836 1.64e-93 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Pral4560g00001 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4560g00001 K13436 - mnt:21407434 625.55