Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4555g00002 ATGGGGGATCACTTTGTATTGCTGGTTGATCGTTTGCTCACTGAATCTACATTAGAAGCTGCACTTGAAAGCCGAAATCGTGCAATGCAGGAGGCTGCATCCTCAGCTGTGAATGAAGCACCGGAAGTTGATGTCTCTTTGATAAAGATGGGGATGGAAGATGTGAAATCTCCGAGGAAAATTGTTGAATGTCGGATATGTCATGATGAGGATGAAAATTCCAATATGGAGACACCGTGCTCCTGTTGTGGTAGTTTGAAGTACGCACACCGCAGATGTATACAAAGGTGGTGTAATGAGAAGGGTGACACCATCTGTGAGATATGCCACCAGCAATATAAACCTGGTTATACGGCTCCACCTCCATTGTTTCGGTTTGGACGAATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCTAGAAGAGATTTGAACAATGGTCATCTGGTTCGCATGGTTTCCACTGACCAGAATCTTAACAATTCTAACTACGACCAGTATTCAGCTTCTACTACAGGAAGTTTACCATGCTGTCGTTCAGTTGCTCTCATTTTCATGGTTTTTCTTATCTTAAGACATACTCTTCCTCTCATAATCAGTGGGAACAAGGACTATTCCTTTTCGCTGTTTTTGTTGTTACTAATTCGAGCTGCGGGAATTGTTATTCCCATATATTTCATGGTGAAAGCGGTGACATCCATACAACGCCATAGGCGACAACAACGGGAGCCTTCTAATGCCTTGGTCAACCTATCGGATGATGAAAGGGAGCAAGTAACTCTGCCCTCTCAGCTTCATGTTATTCGTGTTCAGTGA 816 0.4326 MGDHFVLLVDRLLTESTLEAALESRNRAMQEAASSAVNEAPEVDVSLIKMGMEDVKSPRKIVECRICHDEDENSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTICEICHQQYKPGYTAPPPLFRFGRIPMSFRGNWEISRRDLNNGHLVRMVSTDQNLNNSNYDQYSASTTGSLPCCRSVALIFMVFLILRHTLPLIISGNKDYSFSLFLLLLIRAAGIVIPIYFMVKAVTSIQRHRRQQREPSNALVNLSDDEREQVTLPSQLHVIRVQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4555g00002 271 CDD RING_CH-C4HC3_MARCH 64 110 - -
Pral4555g00002 271 SMART ringv_2 63 110 IPR011016 GO:0008270
Pral4555g00002 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 119 IPR013083 -
Pral4555g00002 271 FunFam Zinc finger family protein 52 119 - -
Pral4555g00002 271 Pfam Protein of unknown function (DUF3675) 115 231 IPR022143 -
Pral4555g00002 271 ProSiteProfiles Zinc finger RING-CH-type profile. 56 116 IPR011016 GO:0008270
Pral4555g00002 271 SUPERFAMILY RING/U-box 62 114 - -
Pral4555g00002 271 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 241 IPR033275 -
Pral4555g00002 271 Pfam RING-variant domain 64 109 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4555g00002 Pral-Chr4555 26378 30022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4555g00002 58 110 C3H Transcription Factor Family AT2G37950 46.429 2.32e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4555g00002 - - gmx:100792304 421.779