LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4548g00035	ATGGCGGAAAGTCCGGTGTTGTTCTTACTGGACAAGTTGACCTCTTTACTGCAAGAAGAAGTTCAGCTTTTGAAGGGTGTTCGCACAGAGGTTCAGTTCATTAAAGATGAACTGGAGCGTCTCAAGGCCATCTTAAGAATGGCCGATGCTTTGGAGGACAAAGACCCAGAACTCAAAGTCTGGGTGAAGCAAGTCAGAGATGTAGCTCATGACATGGAAGACGCCATTGATGAGTTCACTATTCGCCTCGTGAATCATCATGGCCATGGCCACAATTCTGCTTTCAGAAGGTTTGCTTCAGGCATTAAAGCTCTCAGAGCTCGACATCAGATTGCTTCTGACTTGCAAGAGATCAAAGGCAGAGTCGAAAACATCTCCAAGGATCGTCGCAGCATAACTGGGACTGGGCCAAGCTCGAATCTTTTTCATAGATCGAGGCTTGATAGCCAAGGAGATGCACTTCTTCTTGAGGAAGCTGATCTTGTGGGTATTGAGAAGCCAAAGAAGCAGCTAATTGATTTGCTTTACCATGGGGAACAAGGAAAGGCGGTGATTCCAATCTATGGAATGGGAGGGCTGGGCAAAACCACAGTGGCAAAGCAGGTTTATGATGACCCAAAAGTGAAGAGGCGTTTTAAGATGCACGCTTGGGTCACAGTTTCTCAATCCTTCAAGATCAAAGAGCTTCTAAGAGACCTGGTTCAACAGCTTCATAAAGTTATTGGAAAACCAGCTCCTGCAGAAATTGGCACAATGAAAAGTGACAATCTGAAGGAGTTGGTCAAGAGTCTGCTTCAACAAAGTAGATACCTCATCGTTCTGGATGACATATGGCGGGTAAATGCATGGGATGCTATCAAACTTGCTTTGCCTAACAATAACTATGGCAGTAGAATAATGATCACCACAAGAAACAGAGAGGTAGCACTTTCTTGCTGCACTGAGTTGCAAGGTAAGATCTATAACCTGGAATTCTTACCTCAGGATGAAGCATGGGCTCTTTTCTGTAAGAAAACATTTCAGGGGAATTCATGTCCTCCTTATTTGGAGGAGTCTTCTAAGAGTATCTTGAAAAGGTGTGGGGGGTTGCCTCTGGCAATTGTGGCTATCAGTGGTGCTTTGGCTACAAAAGACAGAAGCAACATAGAAGAATGGTCAGCTGTTAGCAAAAGTATGGCATCTGAAATTGAAAGCAATGACAAAATGGAGGATATGAACAAAGTGCTTTCTCTGAGTTTCAATGATTTGCCTTACTATCTCAAATCCTGTCTGTTGTACCTGATCATCTTTCCAGAATTTTATGCCATTGAGCATATGAGGTTGATTCGCTTGTGGATAGCTGAAGGGTTTGTCAATGGAGAAGAAGGAAGGACACTAGAAGAAGTTGCAGAAAGTTACCTGAAGGAGCTCTTGAACAGGAGTCTGATTCAAGTGGTAGAGAAAGGCAGTGATGGCAGGATGAAGACTTGTCGTGTTCATGACTTTCTACGGGACATCATCAATCTGAAGTCAAAAGATCAAAACTTTGCAACACTGGCCATGGACCAGGACATAATATGGCCAGAAAGAGTCCGTCGCTTATCAGTAATGAATAGTTTGCAGACCGTACAGCAAAATAGGACCTCATTTCAATTGCGTTCTCTGCTATTGTTTTCTTTAGCAGATTCAAATGATGACATCTGTTTATCTGGATTATTCTCAAAGGGTTGTAGGCTAGATCTGCAAGATGCACCTTTGGAGTCGTTTCCTGCTGAAGTTGTCAACCTTTACCACCTGAAGTATCTAAGCCTGAAGAATACCAAGGTAAAAAGTATTCCAGGCTCCATTAAGAAACTTCAAAACCTGGAGACATTAAATCTCAAACACTCCTATGTCACGGAATTGCCAGTTGAAATCTTGGAGCTGCAACGACTACGCCATCTTCTGGTGTATCGTTATGAGATTGAATCCTATGCTCATTTCCTCTCAAGGCATGGCTTCAAGCTGCCTGGTCCAATAGGATGCATGCAATCTCTGCAAAAGCTGTGTTTCATAGAGGTAGACCAAGGAAGTCAAGACTTGATGGTTGAGCTTGGAAAGCTGACTCAACTCAGAAGGCTGGGCATAAGAAAGCTGAAGAAAGAAGATGGGGCTGCTTTGTGCTCATCCATTCAGAAAATGACAAATCTGAGGTCTCTATCCATAACTGCAGTAGAAGATGATGAGATCATTGACATTCAAAACATTGCCAAGCCTCCTCCATACCTGAGACAACTGTACTTATGTGGACGTTTAGAGAAGTTTCCTGAATGGATACCATCCCTCCAGAATCTAGTCAGAGTGTATTTGAAATGGAGCAGGTTAGAGGAGGATCCTCTGGTGTATCTTCAAGATCTCCCAAATCTAATTCATCTTGAGTTCTTACAGGTTTATGTTGGTGAGACACTGCATTTCAAGGCAGAGAAATTCCCAAGTCTGAAACTTTTAGGCCTTGATGATATGGATGGATTGAAATCCATGATAGTGGAGGAAGGAGCAATGCCAAATCTAAAAAGACTGATCATCCAGAGATGTGGATCATTGAAGAAGGTACCCTCAGGTATAGAACATTTGAGTAAGCTAAAAGCAATTGACTTCTTTGATATGCCTGATGATTTGATCAATGCACTAAGTCCAAATGGAGGTAGCGATCATTGGAGAGTAGAACATGTACCTGCGGTTTATTCAACCTACTGGAAATCTGGTACATGGGATGTCTACTCGGTGGATACTTTTGGGGAGAGAGACAGTTCTTCAAGTAATAATGTTGCAATGAAAAGTCATGAGCGTCGTATACTTTGGAAGGTTTAA	2829	0.4267	MAESPVLFLLDKLTSLLQEEVQLLKGVRTEVQFIKDELERLKAILRMADALEDKDPELKVWVKQVRDVAHDMEDAIDEFTIRLVNHHGHGHNSAFRRFASGIKALRARHQIASDLQEIKGRVENISKDRRSITGTGPSSNLFHRSRLDSQGDALLLEEADLVGIEKPKKQLIDLLYHGEQGKAVIPIYGMGGLGKTTVAKQVYDDPKVKRRFKMHAWVTVSQSFKIKELLRDLVQQLHKVIGKPAPAEIGTMKSDNLKELVKSLLQQSRYLIVLDDIWRVNAWDAIKLALPNNNYGSRIMITTRNREVALSCCTELQGKIYNLEFLPQDEAWALFCKKTFQGNSCPPYLEESSKSILKRCGGLPLAIVAISGALATKDRSNIEEWSAVSKSMASEIESNDKMEDMNKVLSLSFNDLPYYLKSCLLYLIIFPEFYAIEHMRLIRLWIAEGFVNGEEGRTLEEVAESYLKELLNRSLIQVVEKGSDGRMKTCRVHDFLRDIINLKSKDQNFATLAMDQDIIWPERVRRLSVMNSLQTVQQNRTSFQLRSLLLFSLADSNDDICLSGLFSKGCRLDLQDAPLESFPAEVVNLYHLKYLSLKNTKVKSIPGSIKKLQNLETLNLKHSYVTELPVEILELQRLRHLLVYRYEIESYAHFLSRHGFKLPGPIGCMQSLQKLCFIEVDQGSQDLMVELGKLTQLRRLGIRKLKKEDGAALCSSIQKMTNLRSLSITAVEDDEIIDIQNIAKPPPYLRQLYLCGRLEKFPEWIPSLQNLVRVYLKWSRLEEDPLVYLQDLPNLIHLEFLQVYVGETLHFKAEKFPSLKLLGLDDMDGLKSMIVEEGAMPNLKRLIIQRCGSLKKVPSGIEHLSKLKAIDFFDMPDDLINALSPNGGSDHWRVEHVPAVYSTYWKSGTWDVYSVDTFGERDSSSSNNVAMKSHERRILWKV	942

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4548g00035	942	PRINTS	Disease resistance protein signature	184	199	-	-
	Pral4548g00035	942	PRINTS	Disease resistance protein signature	360	374	-	-
	Pral4548g00035	942	PRINTS	Disease resistance protein signature	264	278	-	-
	Pral4548g00035	942	PRINTS	Disease resistance protein signature	610	626	-	-
	Pral4548g00035	942	Pfam	NB-ARC domain	165	414	IPR002182	GO:0043531
	Pral4548g00035	942	SUPERFAMILY	L domain-like	492	879	-	-
	Pral4548g00035	942	PANTHER	DISEASE RESISTANCE PROTEIN RP	31	853	IPR044974	GO:0006952
	Pral4548g00035	942	Coils	Coil	24	54	-	-
	Pral4548g00035	942	Gene3D	-	6	112	-	-
	Pral4548g00035	942	Gene3D	-	326	412	IPR042197	-
	Pral4548g00035	942	Gene3D	Ribonuclease Inhibitor	684	878	IPR032675	-
	Pral4548g00035	942	Gene3D	-	413	504	IPR036388	-
	Pral4548g00035	942	CDD	RX-CC_like	2	127	IPR038005	-
	Pral4548g00035	942	Gene3D	-	150	317	IPR027417	-
	Pral4548g00035	942	Gene3D	Ribonuclease Inhibitor	565	683	IPR032675	-
	Pral4548g00035	942	FunFam	Probable disease resistance protein At1g61300	151	315	-	-
	Pral4548g00035	942	FunFam	Probable disease resistance protein At1g63360	413	502	-	-
	Pral4548g00035	942	Pfam	Rx N-terminal domain	7	96	IPR041118	-
	Pral4548g00035	942	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	156	427	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4548g00035	Pral-Chr4548	165446	168611	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4548g00035	185	623	WRKY Transcription Factor Family	AT5G45050	22.052	4.16e-08	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4548g00035	K13457		-	gmx:100305458	1360.13