Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4548g00028 ATGGCGACGACTGTAAGCAATAACTTGGACAGCAATGGGCCAGAATTCGCGGGCTGTCGTTGGTATTCACCAGAAACAGGAATTTACACTAGCAAACACGCTCCGGTGGAGCTTCCTTCAGACCCATTTCTCGATGTTGTTTCTTATATTTTTTCTCACCAACACAATGGAGTTTCAGCTCTCATAGATTCTTCATCTGGATGTTCAATTTCTTACTCGGAATTGTTTTCTTTGGTGAAATCCATGGCATGTGGTCTCCAAAAAATGGGTGTTTCAAAAGGTGACGTTGTTCTACTTCTAATTCCTAATTCCATTTACTATCCCATTGTTTTCTTGGGTGTTTTGTATCTTGGCGGAATTGTCACACCGTTGAATCCTCTAAGTCACATTTCAGAAATCCGTAAGCAATTATCTGAATGTGGTGTGAGTCTGGCTTTTACTCTACAAGAGAGAGTTCGAAAACTACAATCGTTGGCCATTCCAGTTATTGAGGTTCCCGAAAATCTGAAGGACTTGAAATACTCTGATTACCCAGTTTTTTATAATCTTGTTTCGGGTAAGTCGGATTTGTTTCCGAGGCCGGTTATTAAACAAGAAGACAAGGCGGCTATAATGTATTCTTCTGGGACTACGGGTGTGAGCAAAGGAGTTATTCTAACACATAAGAATTTTGTTTCTATGGTTGAGCTTTTCGTGAGGTTTGAAGCTTCTCAATATGAATATTCAAGCTCAAAGAATGTGTTTTTAGCTGTTCTGCCGATGTTCCATATATATGGTTTATCACTCTTTGCGGCAGGATTACTGTCTTTAGGCTCTACGATTATTGTAATGAGAACATTTAACATCGACGAGGTGATTAAGGTGATTGATAATTACAGAGTCACACACTTCCCTGTTGTTCCACCGATATTGACGGCATTGACCAAAAGAGTAACCGACATAAATAGGAGTTATCTGCAAAGCTTGATACAGGTCTCCTGCGGTGCCGCACCTTTGAGCATAAAGACAATAGAGGGCTTCATCCACACTCTACCTGACGTTGACTTTATACAGGGTTATGGAATGACTGAGTCAACTGCAGTAGGAACACGTGGCTTCAATGCTGAAAAGTTTCGAAATTATTCTTCTATAGGGTTGTTAGCTCCCAACATGGAAGCAAAAGTAGTTGATTGGAAGACTGGTGCTTTTTTGCCTCCAGGCAGTATTGGTGAGCTTTGGTTGAGAGGGCCTTCAATTATGAGAGGGTACTTGAATAATGACGAGGCCACAATGTCAACAGTTGATAAAGATGGTTGGCTACACACCGGTGATGTTGTTTGGTTTGATCAAGATGGATATTTACATTTGTCCGACCGCTTGAAAGATATTATCAAATACAAGGGCTATCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTAATTTTGCATCCCGATATAGTTGATGTAGCAGTTACAGGTGCCAATGATGAAGAAACTGGGGAGATGCCAGTGGCTTTTGTGGTCAGGAAGGTTGGAAGTGCCCTCTCTCAGAAAGCTATTATGGATTATGTTGCTCAGCAGGTTGCTCCATACAAGAAGGTGAGGAAAGTGGTGTTCATTGACTCAATACCAAGGTCAGCTGCTGGAAAGATTCTCAGAAGGCAACTGAGGCGTTGCTTGGCTTCCAAACTTTGA 1674 0.4158 MATTVSNNLDSNGPEFAGCRWYSPETGIYTSKHAPVELPSDPFLDVVSYIFSHQHNGVSALIDSSSGCSISYSELFSLVKSMACGLQKMGVSKGDVVLLLIPNSIYYPIVFLGVLYLGGIVTPLNPLSHISEIRKQLSECGVSLAFTLQERVRKLQSLAIPVIEVPENLKDLKYSDYPVFYNLVSGKSDLFPRPVIKQEDKAAIMYSSGTTGVSKGVILTHKNFVSMVELFVRFEASQYEYSSSKNVFLAVLPMFHIYGLSLFAAGLLSLGSTIIVMRTFNIDEVIKVIDNYRVTHFPVVPPILTALTKRVTDINRSYLQSLIQVSCGAAPLSIKTIEGFIHTLPDVDFIQGYGMTESTAVGTRGFNAEKFRNYSSIGLLAPNMEAKVVDWKTGAFLPPGSIGELWLRGPSIMRGYLNNDEATMSTVDKDGWLHTGDVVWFDQDGYLHLSDRLKDIIKYKGYQIAPADLEAVLILHPDIVDVAVTGANDEETGEMPVAFVVRKVGSALSQKAIMDYVAQQVAPYKKVRKVVFIDSIPRSAAGKILRRQLRRCLASKL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4548g00028 557 Pfam AMP-binding enzyme 54 459 IPR000873 -
Pral4548g00028 557 CDD 4CL 38 549 - -
Pral4548g00028 557 Gene3D - 455 555 IPR045851 -
Pral4548g00028 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 30 454 - -
Pral4548g00028 557 SUPERFAMILY Acetyl-CoA synthetase-like 57 554 - -
Pral4548g00028 557 Gene3D - 27 454 IPR042099 -
Pral4548g00028 557 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Pral4548g00028 557 Pfam AMP-binding enzyme C-terminal domain 469 543 IPR025110 -
Pral4548g00028 557 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Pral4548g00028 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 23 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4548g00028 Pral-Chr4548 132198 136065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4548g00028 21 557 Monolignol Biosynthesis Gene Families AT4G19010 59.740 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4548g00028 K01904 - gmx:100804808 800.045