Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4546g00005 ATGGAATGGGCCTTGTTCCTCATCATATTAACCAGCTTGGTCTCTAGCATCACCATTGCTTCCATTAAGACGAAGCATTTGTGGGGTTTGGAGATTTGGAAATGGTGCTTGATGGGGATGGTCACGTTCAGTGGAAGGTTAGTCTCCGGCTGGCTCGTGGCTGTCTCCGTGTTCATCATAGAACGGAACTTCATGCTCAGAGAAAAAGTGTTATACTTCATCTACGGTCTCAGAAAAAGCATCAGAAACTGCATATGGCTTGGCCTCGTGTTATTCTCGTACTGGACCGTCGTCTTCGACAACATCCAGAAAAAAAACCACAAGTTCCTCAACAAGGTGTTCCAGGCTCTGGTGGCCGTCCTCCTCGGAGCCATAATCTGGCTCGTAAAGATCGTCCTGGTCAAACTTCTGGCTTCGTCGTTCCACGTCGCGACCTACTTCGACAGAATGAAAGAGAGCGTGTTCCATCATTACATACTGGACACGCTCTCGGGGCCGCCATTGGAGGAGATCGACGGAACGACGTCGCAGCATCTGACGGGGTCCAAGTCAATGCCGGCGAACTGGAAGGAAAGGAACAAGGCGATGAAGGAGGCAAAGAACTTGTACAAGTCGAAGAAGTTTGGGTCGAGGAAGATAGATATGGAGAAGCTGAGAGAACTAAGTATGGAGAGCACGGCGTCGGTGTGGAGCGTGAAAAGGCTGGTCAACTACGTGAGGTCGTCAGGGCTGTCCACGATTTCCCGGACCGTCGACGATTTCGGGAACGCCGAGTCGGAAATCTGCAGCGAGTGGGAAGCTAGGAATTGTGCCCAGAGGATTTTCAAGAACGTTGCTAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGAGTTGAGGTTCATACTATATTCCCGCTCTTCGAAGGTTCACTTGAAACTGGAAAAATCTCCAGGTCCTCATTTAGAAATTGGGTGATTCGAGCTTACTATGAAAGAAAGACTCTGGCACAATCACTGAACGACACCAAAACAGCAGTTCAACAGCTTCACAAACTGGCAAGTTCCATAGTGATAGTTATAACGATCATAGTGTTCCTTTTGGTGATGGAGCTGGCTACCCTCAAAGTAATACTTTTCTTCATCACACAAATAGTTCTGGTTGGGGTTGCCTTCCAAGGCACTTGCAAAACTGTGCTGGAGGCCATCATCTTCGTCTTCATCATGCACCCTTTTGACATTGGAGATCGCTGTGTCATTGACGATGTTCACATGATTGTGGAGGAGATGAATATCTTGACGACTGTGTTTCTTCGATACGACAATGAGAAAATCTACTACCCCAACGCAGTTTTGCTCAGCAAGCCCATAAGCAATTTCTATAGGAGTCCAGAAATGTGGGATTCTGTTGATTTCGTTATTGACGTTTCAACACCTATGGAGACCATCATTTCGCTCAAGAAATCAATTCAAACGTACATAGAGAGCAAGCCGAAGTACTGGAATCCAAAGCACGCGGTGATAGCGAAAGAGATAGAGAATGTGGATAAGCTGAAACTGTGTCTTTGTGTTCAGCACACGATCAACCATCAGAACTATGGGGAGAGAAACAATCGGATGACAGAGCTTTTGTTGGAGCTGAAGAAGATATTTGAGGTGCATGAAGTTAAGTACAATCTTCTTCCTCAGGAGGTTCACATCACCAAGATGAACAGTACCCAAAGTGGGAGGCCTGTGTTGTAA 1740 0.4655 MEWALFLIILTSLVSSITIASIKTKHLWGLEIWKWCLMGMVTFSGRLVSGWLVAVSVFIIERNFMLREKVLYFIYGLRKSIRNCIWLGLVLFSYWTVVFDNIQKKNHKFLNKVFQALVAVLLGAIIWLVKIVLVKLLASSFHVATYFDRMKESVFHHYILDTLSGPPLEEIDGTTSQHLTGSKSMPANWKERNKAMKEAKNLYKSKKFGSRKIDMEKLRELSMESTASVWSVKRLVNYVRSSGLSTISRTVDDFGNAESEICSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEVHTIFPLFEGSLETGKISRSSFRNWVIRAYYERKTLAQSLNDTKTAVQQLHKLASSIVIVITIIVFLLVMELATLKVILFFITQIVLVGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDDVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMWDSVDFVIDVSTPMETIISLKKSIQTYIESKPKYWNPKHAVIAKEIENVDKLKLCLCVQHTINHQNYGERNNRMTELLLELKKIFEVHEVKYNLLPQEVHITKMNSTQSGRPVL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4546g00005 579 Pfam Mechanosensitive ion channel 352 556 IPR006685 GO:0016020|GO:0055085
Pral4546g00005 579 Gene3D - 410 459 IPR023408 -
Pral4546g00005 579 SUPERFAMILY Sm-like ribonucleoproteins 401 459 IPR010920 -
Pral4546g00005 579 PIRSF Memb_At2g17000 1 577 IPR016688 -
Pral4546g00005 579 FunFam Predicted mechanosensitive ion channel 410 459 - -
Pral4546g00005 579 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 1 574 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4546g00005 Pral-Chr4546 32979 38097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4546g00005 1 570 Mechanosensitive Ion Channel Family AT5G12080 48.448 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4546g00005 K22048 - gmx:100813521 946.036