Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4546g00002 | ATGGCTGCTAGTCTCACCGGTGGGGCAATAATGACGATGTGTAGAGACGATTTCTCTTGCGAGGACCTGAAGCCTGTGCTTCAAGTGATTGACTTGAAGCTGGTTCAGTCGCAGCAGCATAACAGCACGGAGAGGTATAGGCTTGTTCTTTCAGATGGTTCCCATTACCAGCAAGGGATGCTTGCTACTCAGAAGAACGAGTTGGTCCATGCTGGACGATTGCAGAAGGGCTCTGTTGTTAAGTTGAATCAGTTTATCTGTAATGTTGTCCAGAGCCGCAAGATCATCATCATTATCGAGCTGGATATGGTAGTTGACAGATGTGATCTGATTGGAGAACCTGTTGCCGCACCAAGAGCTGTACCTACTTCATCTTCCTCTGATCAGTCTGGAGTTACCACAGGGAACCCCCAGTCTTTAACCAGTAATTCACCTGCAGGTGGCAAGATTGCTCGACCAAATGTGATTGGGCCATCTCTAGATCATTCACAAATGAATCTCACTACCAATGGTGCAAGATATGGTACTGCAAATGTCCCTCCTCGATTGCCTAAAGTAGAGCCTGGAGCTACCCCTATTTTACCTAATTCAGGGCCACTCAATGGCTCCTACAGTGAACAGAACATGGGATTTCGCAATCCTCGACCAGAAACTCCAAGACCCCCGCAAAATGCATATATTCGTCCACCACAGCCTATGCATAGACAGCCTTCTCCAATTTACAATAACAGGGGACAAATGGCCAGAAATGAAGCTTTACCAAGGATAATTCCAATAGCTGCATTGAGTCCATACCATAGCATGTGGACAATTAAGGCTAGAGTTACAGCAAAGGCAGGCCTCAGGCAGTACAACAATGCCAGAGGTGATGGCAAGGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCAGTGGCTGAACAGTTCTATCAACAAATTGAAATTGGCAAAGTATATCTCATTTCGAGGGGGAGTATAAAGCCTGCTCAAAAAAATTTTAATCACCTTCCTAATGATCTAGAATTGACCATTGATATTACATCCATCATACAGCCATGCAATGATGACGAGTCAATTCCAATGCGTCTTTTTAATTTTCGTCCTATTAGTGATGTTGAAAGCATGGAAAATTCAAGTGTTGTGGATGTGATTGGTGTGGTTTATTCTGTTAGTCCCACCACTTCAATCATGAGAAAGAATGGCAGTGAAACTCAGAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGTTGTAGTGTTGAGTTAACCCTTTGGGGAGAGTTTTGTAATGCAGAAGGACAACGGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGTCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATAGCCAATAGTCAGCTATTTATAGAGCCTGATTTTCCCGAGGCTTACAGGTTGAAAGAATGGTTTGACAAGGAAGGGAGGAATGTTCCAGCTATTTCTATTTCCAGAGAATCATTCAATGCTGGTAAGACTGATATGAGGAAGACTATATCTCAAATCAAAGATGAGAAGTTGGGGACTTCAGAGAAGCCTGATTGGATTAGCATCTGTGCAAGCATTTCATTCGTTAAGGCTGATTCTTTCTGCTATCCAGCCTGTCCCATCATGATAGGGGATCGGAAATGTAGCAAGAAAGTGTCCAATAATGGAGATGGAAAATGGCGGTGTGATAGATGTGACCAGAATGTTGATGCATGTGAATATAGGTATATACTGCAACTCCAAATACAGGATCACACTGGGCTAACATGGGTTACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCTTACCTGCCAAAGATCTTTATTATATGAAATATGAAGAGCAGGACGATGAAAGGTTTGCTCAAATCATCCGTAAGGTTCTTTTTACTAAATACATATTCAAGTTAAAAGTTAAGGAAGAGACATTCGGTGATGAACAGCGTGTAAAGTCAACGGTAGTGAAAGCAGAGAAGGTGAACTTTTCATCTGAATCAAGACTTCTTTTGGATTTGATTGACAAGCTTAAAGCTGAGAAGGTAGAAGGCATCAATCCTAACTCTGTAATCAGTAATGCTGGACCGCAGAATGTTGGATCTGGCCTGGCTGTGCCGCCAGCTTATACTCCTATAAGGAACAGCAGTGGTGCGAGTAGGGAATATGGGATGCCAGAAAATCAAGTGGGTCAGTATGAACGCCAATATAGGAGTTCTTTTGCTTCAGGTGGGTCTTCTGGTTCATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGTTTTGCCCAAACATTACTAGTGTACCTCGACAGTCCACGGGAGGAGGGGCCTTTACAAATAGGGCATCCTCAGCGGCAGGTGGTGGAATTGCCACTGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTCTCAATGCGGCAGCCCCTTCAGGTTATGGAAATAGTAGTGTTCATGGAGGACATGGGTTTGTTCAAAGGCAACAGCTTGGCGGATTTTGA | 2589 | 0.4392 | MAASLTGGAIMTMCRDDFSCEDLKPVLQVIDLKLVQSQQHNSTERYRLVLSDGSHYQQGMLATQKNELVHAGRLQKGSVVKLNQFICNVVQSRKIIIIIELDMVVDRCDLIGEPVAAPRAVPTSSSSDQSGVTTGNPQSLTSNSPAGGKIARPNVIGPSLDHSQMNLTTNGARYGTANVPPRLPKVEPGATPILPNSGPLNGSYSEQNMGFRNPRPETPRPPQNAYIRPPQPMHRQPSPIYNNRGQMARNEALPRIIPIAALSPYHSMWTIKARVTAKAGLRQYNNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYQQIEIGKVYLISRGSIKPAQKNFNHLPNDLELTIDITSIIQPCNDDESIPMRLFNFRPISDVESMENSSVVDVIGVVYSVSPTTSIMRKNGSETQKRALQLKDMSGCSVELTLWGEFCNAEGQRLQNTCDSGAFPVLAVKAVRVNEFNGKALGTIANSQLFIEPDFPEAYRLKEWFDKEGRNVPAISISRESFNAGKTDMRKTISQIKDEKLGTSEKPDWISICASISFVKADSFCYPACPIMIGDRKCSKKVSNNGDGKWRCDRCDQNVDACEYRYILQLQIQDHTGLTWVTAFQECGEEIMGLPAKDLYYMKYEEQDDERFAQIIRKVLFTKYIFKLKVKEETFGDEQRVKSTVVKAEKVNFSSESRLLLDLIDKLKAEKVEGINPNSVISNAGPQNVGSGLAVPPAYTPIRNSSGASREYGMPENQVGQYERQYRSSFASGGSSGSFMPCSNCGGSGHSSMFCPNITSVPRQSTGGGAFTNRASSAAGGGIATGECFKCHQTGHWARDCPGLNAAAPSGYGNSSVHGGHGFVQRQQLGGF | 862 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4546g00002 | 862 | SUPERFAMILY | Retrovirus zinc finger-like domains | 809 | 835 | IPR036875 | GO:0003676|GO:0008270 | |
| Pral4546g00002 | 862 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 105 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
| Pral4546g00002 | 862 | Gene3D | - | 255 | 365 | IPR012340 | - | |
| Pral4546g00002 | 862 | CDD | RPA1_DBD_A | 258 | 360 | - | - | |
| Pral4546g00002 | 862 | FunFam | Replication protein A subunit | 255 | 364 | - | - | |
| Pral4546g00002 | 862 | FunFam | Replication protein A subunit | 4 | 118 | - | - | |
| Pral4546g00002 | 862 | MobiDBLite | consensus disorder prediction | 190 | 234 | - | - | |
| Pral4546g00002 | 862 | SUPERFAMILY | Nucleic acid-binding proteins | 373 | 502 | IPR012340 | - | |
| Pral4546g00002 | 862 | Gene3D | - | 506 | 697 | IPR012340 | - | |
| Pral4546g00002 | 862 | Pfam | Replication factor-A C terminal domain | 539 | 690 | IPR013955 | - |
Showing 1 to 10 of 33 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4546g00002 | K07466 | - | gmx:100778597 | 1149.81 |
Showing 1 to 1 of 1 entries