Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4546g00002 ATGGCTGCTAGTCTCACCGGTGGGGCAATAATGACGATGTGTAGAGACGATTTCTCTTGCGAGGACCTGAAGCCTGTGCTTCAAGTGATTGACTTGAAGCTGGTTCAGTCGCAGCAGCATAACAGCACGGAGAGGTATAGGCTTGTTCTTTCAGATGGTTCCCATTACCAGCAAGGGATGCTTGCTACTCAGAAGAACGAGTTGGTCCATGCTGGACGATTGCAGAAGGGCTCTGTTGTTAAGTTGAATCAGTTTATCTGTAATGTTGTCCAGAGCCGCAAGATCATCATCATTATCGAGCTGGATATGGTAGTTGACAGATGTGATCTGATTGGAGAACCTGTTGCCGCACCAAGAGCTGTACCTACTTCATCTTCCTCTGATCAGTCTGGAGTTACCACAGGGAACCCCCAGTCTTTAACCAGTAATTCACCTGCAGGTGGCAAGATTGCTCGACCAAATGTGATTGGGCCATCTCTAGATCATTCACAAATGAATCTCACTACCAATGGTGCAAGATATGGTACTGCAAATGTCCCTCCTCGATTGCCTAAAGTAGAGCCTGGAGCTACCCCTATTTTACCTAATTCAGGGCCACTCAATGGCTCCTACAGTGAACAGAACATGGGATTTCGCAATCCTCGACCAGAAACTCCAAGACCCCCGCAAAATGCATATATTCGTCCACCACAGCCTATGCATAGACAGCCTTCTCCAATTTACAATAACAGGGGACAAATGGCCAGAAATGAAGCTTTACCAAGGATAATTCCAATAGCTGCATTGAGTCCATACCATAGCATGTGGACAATTAAGGCTAGAGTTACAGCAAAGGCAGGCCTCAGGCAGTACAACAATGCCAGAGGTGATGGCAAGGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCAGTGGCTGAACAGTTCTATCAACAAATTGAAATTGGCAAAGTATATCTCATTTCGAGGGGGAGTATAAAGCCTGCTCAAAAAAATTTTAATCACCTTCCTAATGATCTAGAATTGACCATTGATATTACATCCATCATACAGCCATGCAATGATGACGAGTCAATTCCAATGCGTCTTTTTAATTTTCGTCCTATTAGTGATGTTGAAAGCATGGAAAATTCAAGTGTTGTGGATGTGATTGGTGTGGTTTATTCTGTTAGTCCCACCACTTCAATCATGAGAAAGAATGGCAGTGAAACTCAGAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGTTGTAGTGTTGAGTTAACCCTTTGGGGAGAGTTTTGTAATGCAGAAGGACAACGGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGTCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATAGCCAATAGTCAGCTATTTATAGAGCCTGATTTTCCCGAGGCTTACAGGTTGAAAGAATGGTTTGACAAGGAAGGGAGGAATGTTCCAGCTATTTCTATTTCCAGAGAATCATTCAATGCTGGTAAGACTGATATGAGGAAGACTATATCTCAAATCAAAGATGAGAAGTTGGGGACTTCAGAGAAGCCTGATTGGATTAGCATCTGTGCAAGCATTTCATTCGTTAAGGCTGATTCTTTCTGCTATCCAGCCTGTCCCATCATGATAGGGGATCGGAAATGTAGCAAGAAAGTGTCCAATAATGGAGATGGAAAATGGCGGTGTGATAGATGTGACCAGAATGTTGATGCATGTGAATATAGGTATATACTGCAACTCCAAATACAGGATCACACTGGGCTAACATGGGTTACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCTTACCTGCCAAAGATCTTTATTATATGAAATATGAAGAGCAGGACGATGAAAGGTTTGCTCAAATCATCCGTAAGGTTCTTTTTACTAAATACATATTCAAGTTAAAAGTTAAGGAAGAGACATTCGGTGATGAACAGCGTGTAAAGTCAACGGTAGTGAAAGCAGAGAAGGTGAACTTTTCATCTGAATCAAGACTTCTTTTGGATTTGATTGACAAGCTTAAAGCTGAGAAGGTAGAAGGCATCAATCCTAACTCTGTAATCAGTAATGCTGGACCGCAGAATGTTGGATCTGGCCTGGCTGTGCCGCCAGCTTATACTCCTATAAGGAACAGCAGTGGTGCGAGTAGGGAATATGGGATGCCAGAAAATCAAGTGGGTCAGTATGAACGCCAATATAGGAGTTCTTTTGCTTCAGGTGGGTCTTCTGGTTCATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGTTTTGCCCAAACATTACTAGTGTACCTCGACAGTCCACGGGAGGAGGGGCCTTTACAAATAGGGCATCCTCAGCGGCAGGTGGTGGAATTGCCACTGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTCTCAATGCGGCAGCCCCTTCAGGTTATGGAAATAGTAGTGTTCATGGAGGACATGGGTTTGTTCAAAGGCAACAGCTTGGCGGATTTTGA 2589 0.4392 MAASLTGGAIMTMCRDDFSCEDLKPVLQVIDLKLVQSQQHNSTERYRLVLSDGSHYQQGMLATQKNELVHAGRLQKGSVVKLNQFICNVVQSRKIIIIIELDMVVDRCDLIGEPVAAPRAVPTSSSSDQSGVTTGNPQSLTSNSPAGGKIARPNVIGPSLDHSQMNLTTNGARYGTANVPPRLPKVEPGATPILPNSGPLNGSYSEQNMGFRNPRPETPRPPQNAYIRPPQPMHRQPSPIYNNRGQMARNEALPRIIPIAALSPYHSMWTIKARVTAKAGLRQYNNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYQQIEIGKVYLISRGSIKPAQKNFNHLPNDLELTIDITSIIQPCNDDESIPMRLFNFRPISDVESMENSSVVDVIGVVYSVSPTTSIMRKNGSETQKRALQLKDMSGCSVELTLWGEFCNAEGQRLQNTCDSGAFPVLAVKAVRVNEFNGKALGTIANSQLFIEPDFPEAYRLKEWFDKEGRNVPAISISRESFNAGKTDMRKTISQIKDEKLGTSEKPDWISICASISFVKADSFCYPACPIMIGDRKCSKKVSNNGDGKWRCDRCDQNVDACEYRYILQLQIQDHTGLTWVTAFQECGEEIMGLPAKDLYYMKYEEQDDERFAQIIRKVLFTKYIFKLKVKEETFGDEQRVKSTVVKAEKVNFSSESRLLLDLIDKLKAEKVEGINPNSVISNAGPQNVGSGLAVPPAYTPIRNSSGASREYGMPENQVGQYERQYRSSFASGGSSGSFMPCSNCGGSGHSSMFCPNITSVPRQSTGGGAFTNRASSAAGGGIATGECFKCHQTGHWARDCPGLNAAAPSGYGNSSVHGGHGFVQRQQLGGF 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4546g00002 862 SUPERFAMILY Retrovirus zinc finger-like domains 809 835 IPR036875 GO:0003676|GO:0008270
Pral4546g00002 862 Pfam Replication factor-A protein 1, N-terminal domain 5 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pral4546g00002 862 Gene3D - 255 365 IPR012340 -
Pral4546g00002 862 CDD RPA1_DBD_A 258 360 - -
Pral4546g00002 862 FunFam Replication protein A subunit 255 364 - -
Pral4546g00002 862 FunFam Replication protein A subunit 4 118 - -
Pral4546g00002 862 MobiDBLite consensus disorder prediction 190 234 - -
Pral4546g00002 862 SUPERFAMILY Nucleic acid-binding proteins 373 502 IPR012340 -
Pral4546g00002 862 Gene3D - 506 697 IPR012340 -
Pral4546g00002 862 Pfam Replication factor-A C terminal domain 539 690 IPR013955 -
Pral4546g00002 862 Pfam Zinc knuckle 817 832 IPR001878 GO:0003676|GO:0008270
Pral4546g00002 862 MobiDBLite consensus disorder prediction 196 212 - -
Pral4546g00002 862 FunFam Replication protein A subunit 506 697 - -
Pral4546g00002 862 Gene3D - 367 505 IPR012340 -
Pral4546g00002 862 PANTHER REPLICATION FACTOR A 1, RFA1 269 675 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4546g00002 862 NCBIfam replication factor-a protein 1 (rpa1) 232 696 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4546g00002 862 SMART c2hcfinal6 771 787 IPR001878 GO:0003676|GO:0008270
Pral4546g00002 862 SMART c2hcfinal6 817 833 IPR001878 GO:0003676|GO:0008270
Pral4546g00002 862 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Pral4546g00002 862 CDD RPA1N 8 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pral4546g00002 862 SUPERFAMILY Nucleic acid-binding proteins 520 697 IPR012340 -
Pral4546g00002 862 SUPERFAMILY Nucleic acid-binding proteins 256 367 IPR012340 -
Pral4546g00002 862 MobiDBLite consensus disorder prediction 120 148 - -
Pral4546g00002 862 ProSiteProfiles Zinc finger CCHC-type profile. 818 832 IPR001878 GO:0003676|GO:0008270
Pral4546g00002 862 CDD RPA1_DBD_C 523 688 IPR047192 -
Pral4546g00002 862 CDD RPA1_DBD_B 389 496 - -
Pral4546g00002 862 FunFam Replication protein A subunit 367 505 - -
Pral4546g00002 862 Pfam OB-fold nucleic acid binding domain 269 355 IPR004365 GO:0003676
Pral4546g00002 862 Gene3D - 769 839 - -
Pral4546g00002 862 Pfam Replication protein A OB domain 378 481 IPR031657 -
Pral4546g00002 862 Gene3D - 3 117 IPR012340 -
Pral4546g00002 862 MobiDBLite consensus disorder prediction 215 234 - -
Pral4546g00002 862 MobiDBLite consensus disorder prediction 118 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4546g00002 Pral-Chr4546 10750 14644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4546g00002 1 813 Core DNA Replication Machinery Family AT5G45400 51.916 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4546g00002 K07466 - gmx:100778597 1149.81