Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4542g00038 ATGGCAAACTTCGATCATGATCTCATCAAAGATGTAGATGATTCTAAAGATACCTGGTGTATTGTTGCGAGAGTGCTGAGAAAATGGATTATGGCTAAAAAGACACCGCCTTTTGATATTTTTAAAGTAGGGATGATTTTAGTTGATGAACAGGGGTATAGAGTTGAAGCTTTTATGTCCCAGAAAGCACAATTACAAAGATACATGGATGAAATAACAGAGGGTGAAGTATATCAGTTTGAGAACTTTGTAGCTGTGCCCAACAATGATGCTTTCAAACTTTGTCATCACACTTGGAAGATTCGTTTCCACTCCATGACGTTTTTCCAAAAGCATGACTTAGCAGTCCCTTTAAATGCATTTAACTTTGTTCCAATAAAGGATATTGCTGACTATAATGCTACAAATTATGAATTGATTGATGTCATTGGGTTCCTTCAAGCATTTGGAAACTTGGTTGACCACAAAAAAGACTCACAGACCATAAAGACACTGAATTTCACCATCGCTGATCATAACCAAATCCCCATTAACGTGGCTCTTTTCGGAGATGTGGCAATCAATGCATTTGAAGCTAGGACTGATGATTTGGAAGTTCCTACTGTAGTTGTCATCCGATTTGCAAGGATATCAACAACTAAAGGTTACGGACATATAACTAATGCTTTCCATGCTACAAGAGTTTTGTTCAATCCAGACCTCCCTGAAGTCAGAGAATTAATTGCCAGACTCGGTGAGACACCTGGAGCAAGTCAGAACTTCTCACAAGTTTCATCTACCGTAATGCTTGATGCTACCAGTAACTCACTCCTGACTTTCCCAACCAGAATTCCCCTTTCTGAAATTTCCAAACTCACAAAGGAAAGTCAAATTGTCACCAAGGTCACCATCCAGAAAGTTGAGAGTGAGTATGGTTGGACCTATGATGGATGTCCATGCGATAAAAAACCAGTGCATGTTGATGATAAATTGATGAAGTGTACTTCTTGTAATCAAGAAGTGCTTAAGACTGAACCCAAGTTCAAAGTCCATTACAAAGTATTTGATTCCACTGGACAATGTTCGATGCTTTTCTTCAACCGGCATGCATCTGCTCTATTAGAATGTTCAGCTTCTGAACTTAAGAAGAAGGTGGGGTCGTCTCGATCTTTTCCAAAAGAGTTAGATCGACCTGTTGGAAAGGAAATTGTCGTAATGGTCAAGGTTAAGGAAAACAACATAAAATATCCTGCCAGTAGTATGGGAGTGTCACAGTTCTCTGTGAAAAAGGATATTTTGGATCAGTTCACATACTCTAATGTCAGCGCTGATGCCAACGCTAATGTCAAGAATTCACCAATCGAGTCATCTTCCTCATACTCATCTCCCAAGATGCTTGGCACTCACAACATTGCGGATGATGATGATGATCTTACAATATCTCAGATAATCACACCTGTGGAGACCTTGTCAAAGAAAAAGAGGAACGGGAAAAATGAATCAGAACAACTTGATGATATAGGCCTCTCTGAAGGGTCCCCTCCAAGCTTCAGCAGCACCAAACCGGCAAAGAAGATAAGGAGAAATGACTAG 1572 0.3982 MANFDHDLIKDVDDSKDTWCIVARVLRKWIMAKKTPPFDIFKVGMILVDEQGYRVEAFMSQKAQLQRYMDEITEGEVYQFENFVAVPNNDAFKLCHHTWKIRFHSMTFFQKHDLAVPLNAFNFVPIKDIADYNATNYELIDVIGFLQAFGNLVDHKKDSQTIKTLNFTIADHNQIPINVALFGDVAINAFEARTDDLEVPTVVVIRFARISTTKGYGHITNAFHATRVLFNPDLPEVRELIARLGETPGASQNFSQVSSTVMLDATSNSLLTFPTRIPLSEISKLTKESQIVTKVTIQKVESEYGWTYDGCPCDKKPVHVDDKLMKCTSCNQEVLKTEPKFKVHYKVFDSTGQCSMLFFNRHASALLECSASELKKKVGSSRSFPKELDRPVGKEIVVMVKVKENNIKYPASSMGVSQFSVKKDILDQFTYSNVSADANANVKNSPIESSSSYSSPKMLGTHNIADDDDDLTISQIITPVETLSKKKRNGKNESEQLDDIGLSEGSPPSFSSTKPAKKIRRND 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4542g00038 523 Pfam Domain of unknown function DUF223 45 132 IPR003871 -
Pral4542g00038 523 MobiDBLite consensus disorder prediction 484 498 - -
Pral4542g00038 523 MobiDBLite consensus disorder prediction 444 466 - -
Pral4542g00038 523 SUPERFAMILY Nucleic acid-binding proteins 279 408 IPR012340 -
Pral4542g00038 523 SUPERFAMILY Nucleic acid-binding proteins 121 244 IPR012340 -
Pral4542g00038 523 MobiDBLite consensus disorder prediction 484 523 - -
Pral4542g00038 523 Gene3D - 8 113 IPR012340 -
Pral4542g00038 523 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
Pral4542g00038 523 CDD RPA1_DBD_B_like 141 244 - -
Pral4542g00038 523 PANTHER OS03G0429900 PROTEIN 8 486 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4542g00038 523 Gene3D - 115 254 IPR012340 -
Pral4542g00038 523 CDD RPA1_DBD_C 287 409 IPR047192 -
Pral4542g00038 523 CDD RPA1_DBD_A_like 20 107 - -
Pral4542g00038 523 MobiDBLite consensus disorder prediction 444 459 - -
Pral4542g00038 523 Pfam Replication factor-A C terminal domain 293 406 IPR013955 -
Pral4542g00038 523 Gene3D - 265 426 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4542g00038 Pral-Chr4542 226285 228828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4542g00038 16 388 Core DNA Replication Machinery Family AT5G08020 24.485 2.87e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4542g00038 - - pcin:129301944 353.214