LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4542g00029	ATGAGTAATCGTCTGGAAGTTGGGAGGGCTGCCTCGGGTAAAAGAAGACTGAAAGACCTATTGCTTCAAAAAGACAATCGTTTTTGTGCTGATTGTAATGCTCCAGATCCCAAGTGGGCGTCAGCTAATATTGGAGTTTTTATTTGCTTAAAATGTTGTGGCGTACACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCTGATGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATGGTTCTGCTAATAAAATTTATGAGGCTCATATTCCGGAAGGATATAGTAAGCCCACACCAGATGCCGGTCATGAGCAGCGTGCAAATTTCATCCGATCCAAGTATGAGCTTCAAGACTTTTTGAAACCTGGTTTGCGCATTTCATCTGGAAAAAGCTCTCAAGTGTCAAATTCTTCCAACAAATTTATGGATAGTTTCCGTAGCACTAGTGGTCCACAGAAAACGGAAGGAATGGTTGAATTTATTGGGTTGCTGAAGGTCAAAGTGGTTAAAGGCACAAATTTAGCTATTCGGGATATGATGTCTAGTGATCCATATGTCGTCTTAAAACTTGGCCAACAGACAGTTCAGACAGCTGTAGTGAACAGTAACTTGAATCCGGTTTGGGATGAGGAACTAATGCTTTCTGTTCCCCAGGAATATGGATCATTGAAATTGCAAGTATATGATCATGATACATTCTCGGCGGATGATATAATGGGCGAGGCAGAAATTGATCTCCAACCGATGATAACGTCAGCAATGGCATTTGGAAAAGCGGAAATGTTTGGCGATATGCAGATTGGAAAATGGCTTAAATCTGATGACAATGCTCTCATAGAGGATAGCTTAGTCAATATAGTTGATGGAACGATTTTACAGAAAATGACTCTCAAGCTCCAAAATGTTGAATCGGGAGAAGTAGATTTAGAACTTGAATGGATGCCTCTTGATCAATAG	984	0.4024	MSNRLEVGRAASGKRRLKDLLLQKDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNGSANKIYEAHIPEGYSKPTPDAGHEQRANFIRSKYELQDFLKPGLRISSGKSSQVSNSSNKFMDSFRSTSGPQKTEGMVEFIGLLKVKVVKGTNLAIRDMMSSDPYVVLKLGQQTVQTAVVNSNLNPVWDEELMLSVPQEYGSLKLQVYDHDTFSADDIMGEAEIDLQPMITSAMAFGKAEMFGDMQIGKWLKSDDNALIEDSLVNIVDGTILQKMTLKLQNVESGEVDLELEWMPLDQ	327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4542g00029	327	CDD	C2_ArfGAP	170	314	-	-
	Pral4542g00029	327	SMART	C2_3c	172	267	IPR000008	-
	Pral4542g00029	327	SUPERFAMILY	ArfGap/RecO-like zinc finger	14	130	IPR037278	-
	Pral4542g00029	327	Pfam	C2 domain	172	261	IPR000008	-
	Pral4542g00029	327	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	14	128	IPR001164	GO:0005096
	Pral4542g00029	327	CDD	ArfGap	17	123	-	-
	Pral4542g00029	327	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	169	327	-	-
	Pral4542g00029	327	Pfam	Putative GTPase activating protein for Arf	15	130	IPR001164	GO:0005096
	Pral4542g00029	327	Gene3D	Arf GTPase activating protein	3	134	IPR038508	-
	Pral4542g00029	327	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	167	256	IPR035892	-
	Pral4542g00029	327	FunFam	Arf-GAP with dual PH domain-containing protein 1	9	137	-	-
	Pral4542g00029	327	SMART	arf_gap_3	14	136	IPR001164	GO:0005096
	Pral4542g00029	327	ProSiteProfiles	C2 domain profile.	156	268	IPR000008	-
	Pral4542g00029	327	PRINTS	HIV Rev interacting protein signature	26	45	IPR001164	GO:0005096
	Pral4542g00029	327	PRINTS	HIV Rev interacting protein signature	45	62	IPR001164	GO:0005096
	Pral4542g00029	327	PRINTS	HIV Rev interacting protein signature	66	87	IPR001164	GO:0005096
	Pral4542g00029	327	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	7	327	IPR044518	GO:0005096\|GO:0005543
	Pral4542g00029	327	Gene3D	C2 domain	169	327	IPR035892	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4542g00029	Pral-Chr4542	133237	138444	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4542g00029	7	327	C2H2 Transcription Factor Family	AT4G21160	73.030	0.0	509

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4542g00029	K12486		-	qsa:O6P43_013125	534.643