Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4542g00022 ATGACTTCATCTGATCATGAATTTATTGATAACGAAGCTAATGAGCAGCAGCAGCAATCTAACTCAGAGATGCAGTCTTCATCTGCAAACGGAATTTCTGATTCAGGTATTGCTACCCAGAATGTTCAGTATGCAGTGCCTCCTCCACAGACTGGAACTGGACCTGCTATGGCACCGGTTTATCCATACCCCGATCCTTACTATAGGAGCATCTTTGCTCCATATGAGACACAACCTTATGCCCCACAACCCTATGGAGCACAGCCAATGGTTCATCTTCAGTTAATGGGGATTCAACAAGCCGGTGTTCCTCTGCCAACAGATGCAGTTGAGGAACCTGTATTTGTCAATGCAAAACAGTATCATGGTATATTGAGGCGCAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTTATCAGGAATCGCAAGCCATATTTGCATGAGTCCCGGCATTTGCATGCATTGAGAAGAGCACGAGGATGTGGAGGTCGGTTTCTTAATTCAAAGAAAAGCGAGGACGAACAGAATGAGGTATCATCAGCAGATAAATCACTGTCCAATACCAATCTGAGTCCTGACCAAAAGGATCTCGCTTCATCAGATGGGATTTCCTGA 621 0.4444 MTSSDHEFIDNEANEQQQQSNSEMQSSSANGISDSGIATQNVQYAVPPPQTGTGPAMAPVYPYPDPYYRSIFAPYETQPYAPQPYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKSEDEQNEVSSADKSLSNTNLSPDQKDLASSDGIS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4542g00022 206 Gene3D - 110 171 - -
Pral4542g00022 206 MobiDBLite consensus disorder prediction 13 48 - -
Pral4542g00022 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Pral4542g00022 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Pral4542g00022 206 MobiDBLite consensus disorder prediction 165 206 - -
Pral4542g00022 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 193 IPR001289 GO:0003700|GO:0006355
Pral4542g00022 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Pral4542g00022 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Pral4542g00022 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Pral4542g00022 206 MobiDBLite consensus disorder prediction 1 57 - -
Pral4542g00022 206 MobiDBLite consensus disorder prediction 182 206 - -
Pral4542g00022 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4542g00022 Pral-Chr4542 114298 118906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4542g00022 1 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 60.096 3.72e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral4542g00022 CBFB_NFYA 9.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4542g00022 K08064 - gmx:100809036 296.589