Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4542g00021 ATGCAGTCTTCATCTGCAAACGGAATTTCTGATTCAGGTATTGCTACCCAGAATGTTCAGTATGCAGTGCCTCCTCCACAGACTGGAACTGGACCTGCTATGGCACCGGTTTATCCATACCCCGATCCTTACTATAGGAGCATCTTTGCTCCATATGAGACACAACCTTATGCCCCACAACCCTATGGAGCACAGCCAATGGTTCATCTTCAGTTAATGGGGATTCAACAAGCCGGTGTTCCTCTGCCAACAGATGCAGTTGAGGAACCTGTATTTGTCAATGCAAAACAGTATCATGGTATATTGAGGCGCAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTTATCAGGAATCGCAAGCCATATTTGCATGAGTCCCGGCATTTGCATGCATTGAGAAGAGCACGAGGATGTGGAGGTCGGTTTCTTAATTCAAAGAAAAGCGAGGACGAACAGAATGAGGTATCATCAGCAGATAAATCACTGTCCAATACCAATCTGAGTCCTGACCAAAAGGATCTCGCTTCATCAGATGGGATTTCCTGA 552 0.4529 MQSSSANGISDSGIATQNVQYAVPPPQTGTGPAMAPVYPYPDPYYRSIFAPYETQPYAPQPYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKSEDEQNEVSSADKSLSNTNLSPDQKDLASSDGIS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4542g00021 183 MobiDBLite consensus disorder prediction 142 183 - -
Pral4542g00021 183 MobiDBLite consensus disorder prediction 1 33 - -
Pral4542g00021 183 MobiDBLite consensus disorder prediction 159 183 - -
Pral4542g00021 183 Gene3D - 87 148 - -
Pral4542g00021 183 PRINTS CCAAT-binding transcription factor subunit B signature 90 112 IPR001289 GO:0003700|GO:0006355
Pral4542g00021 183 PRINTS CCAAT-binding transcription factor subunit B signature 121 144 IPR001289 GO:0003700|GO:0006355
Pral4542g00021 183 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 171 IPR001289 GO:0003700|GO:0006355
Pral4542g00021 183 SMART cbf3 86 147 IPR001289 GO:0003700|GO:0006355
Pral4542g00021 183 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 89 144 IPR001289 GO:0003700|GO:0006355
Pral4542g00021 183 MobiDBLite consensus disorder prediction 1 25 - -
Pral4542g00021 183 ProSiteProfiles NF-YA/HAP2 family profile. 87 147 IPR001289 GO:0003700|GO:0006355
Pral4542g00021 183 ProSitePatterns NF-YA/HAP2 subunit signature. 92 112 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4542g00021 Pral-Chr4542 114298 118906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4542g00021 29 183 CCAAT-HAP2 Transcription Factor Family AT1G30500 68.590 3.99e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral4542g00021 CBFB_NFYA 7.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4542g00021 K08064 - gmx:100809036 284.648