Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4542g00005 ATGAAAGATGGAGGAAGGAAGCAGGGTGCCGCGTCGCCGTGTGCGGCATGCAAGCTGCTTCGAAGAAGATGTGCTAACGACTGTGTCTTCGCTCCTTATTTCCCCGCCGATGAGCCCCACAAGTTCGCTAATGTTCACAAAGTCTTTGGAGCCAGTAATGTCAACAAAATGCTTCAGGAGCTACCAGTGCATCAAAGAGGGGATGCAGTGAGCAGTATGGTGTATGAGGCAAATGCAAGAGTGAGAGATCCAGTGTATGGGTGTGTTGGGGCCATCTCTTCTCTTCAGCAGCAGATTGATGTGCTTCAGACCCAATTGGCCTTAGCCCAGGCTGAGGTGGTCCATCTTAGGGTTAGCCAGTCTGCTTCCCTTTCCAACCATGGGCTCAGCCCAACTAGCAGTGATTCGCCCCCACCTTCAAAGCCCGTTTTTGACATTGACTTTGTGATGGACCAATCCACATATTCTGATTCAATGTGGCCCTGCTAG 489 0.5112 MKDGGRKQGAASPCAACKLLRRRCANDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVSQSASLSNHGLSPTSSDSPPPSKPVFDIDFVMDQSTYSDSMWPC 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4542g00005 162 Coils Coil 92 112 - -
Pral4542g00005 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 125 - -
Pral4542g00005 162 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Pral4542g00005 162 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4542g00005 Pral-Chr4542 12347 14318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4542g00005 1 162 AS2 family AT1G31320 72.674 3.51e-79 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral4542g00005 LOB 1.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4542g00005 - - pvy:116125810 264.618