Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4540g00043 ATGGCACATTCAGCAGAACCTTCATCATCTTTAAGCTTTACCTCGTCTTCCCACTTATCAAATGGCTCTGTCAGCCACAACATGTGCTCTTCCCACGGTGCTGAACCTTTACCAAACCTTGAAGCGCTCAGTTTGAGTAAGCTTAGCTCAAGTTTGGAGCAGCTTTTGGCTGATTCTGATGTTGATTATAGTGATGCTGACATCGTTGTTGAAGGAGAAACGGTTGGTGTTCATCGATGTATTCTAGCCTCTAGAAGCAAGTTTTTCCGCACATTATTCAAGAGAGATAAAGGATCTTCACAGAAAGAAGGAAAATTTAAGTATTGCATGAATGATTTGCTGCCACATGGCAAGGTGGGACTTGAAGCCTTTCACATATTCTTGTTCTATATATATACAGGAAAACTCAAGCCCTCTCCAATGGAAGTGTCAACTTGCGTTGATAATTTTTGTGCCCATGATGCCTGTAGACCAGCAATAAATTTTGCTGTGGAGTTGATGTACGCCTCTTCCATCTTTGAAATACCAGAATTGGCATCACTTTTTCAGCGACGCCTCACTAATTTCATAGGGAAGGCTTTTGTGGAGGATGTCATCCCAATACTTACTGTTGCTTTTCATTGTCAATTGAGTCAACTTGTCGCCCAATGTGTTGATAAGATAGCACGATCAAACCTTGATCAAATCTCCATTGAGAAAGAGCTTCCCTTAGAACTTGCAGATAAAGTTAAACTGCTCCGCCGCAATTACCTTCATGATGTTGAAAACAACACCTCTGTAGTTGATGACCCAATACGTCAGAAGAGAATTACTAGAATACATAAGGCTCTAGACTCAGATGATGTTGAGCTTGTTAAACTGCTTTTAACTGAATCAGAGATAACATTGGATGAAGCCAATGCTCTTCACTATGCTGCAGCCTACTGTGACCCTAAGGTTGTTTCTGAGGTTCTAGCTTTGGGGGAGGCTGATGTCAATCTTCGGAATTCTCGAGGCTACACTGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTATCCCTTCTAACAAAGGGGGCTTGTGCATCAGAGGCGACCTTTGATGGTCAAAGTGCTGTTAGCATCTGTAGGAGGTTAACAAGACCAAAGGACTATCATACAAAAACAGAACAGGGGAAAGAAACGAACAAAGATCGCATATGCATTGATGTTCTTGAAAGAGAAGTCCTGAGAAATCCAATGGCTGGGGATGCTATAATTTCTTCCCACACAATGGCTGATGATCTGCACATGAAGCTACTATATCTTGAGAACAGAGTGGCATTTGCGAAACTATTCTTCCCTTCAGAAGCCAGATTGGCTATGGACATTGCGCATGCTCAGACAGCATCCGAGTTTGCAGGTCTTTCTACATCAAAAGGGTCAAATGGGAATTTGAGGGAGGTCGATCTAAATGAGACTCCCCTGGCGCAGAATAAAAGACTTCGTGCTAGGATGGATACCCTTATGAAAACAGTTGAGATGGGCCGGCGCTATTTTCCTCATTGCTCGGAAGTGCTTGACAAGTTCATGGAGGATGACCTGCCTGATTTGTTTTACCTGGAGAAGGGCACCCCAGATGAGCAGAAAATCAAGAGAGCACGTTTCATGGAGCTCAAAGACGACGTTCAGAAGGCTTTCAGCAAGGACAAAGCTGCTGGGCTTCCCTCATCATCATCCTCATCATCTTTGAGAGGCTCTGTAAATTACAAGGCTAGGAAAGTTTGA 1755 0.4325 MAHSAEPSSSLSFTSSSHLSNGSVSHNMCSSHGAEPLPNLEALSLSKLSSSLEQLLADSDVDYSDADIVVEGETVGVHRCILASRSKFFRTLFKRDKGSSQKEGKFKYCMNDLLPHGKVGLEAFHIFLFYIYTGKLKPSPMEVSTCVDNFCAHDACRPAINFAVELMYASSIFEIPELASLFQRRLTNFIGKAFVEDVIPILTVAFHCQLSQLVAQCVDKIARSNLDQISIEKELPLELADKVKLLRRNYLHDVENNTSVVDDPIRQKRITRIHKALDSDDVELVKLLLTESEITLDEANALHYAAAYCDPKVVSEVLALGEADVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASEATFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREVLRNPMAGDAIISSHTMADDLHMKLLYLENRVAFAKLFFPSEARLAMDIAHAQTASEFAGLSTSKGSNGNLREVDLNETPLAQNKRLRARMDTLMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTPDEQKIKRARFMELKDDVQKAFSKDKAAGLPSSSSSSSLRGSVNYKARKV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4540g00043 584 Pfam NPR1/NIM1 like defence protein C terminal 373 572 IPR021094 -
Pral4540g00043 584 MobiDBLite consensus disorder prediction 557 584 - -
Pral4540g00043 584 SUPERFAMILY Ankyrin repeat 266 374 IPR036770 -
Pral4540g00043 584 ProSiteProfiles Ankyrin repeat profile. 331 356 IPR002110 GO:0005515
Pral4540g00043 584 FunFam Regulatory protein NPR3 38 222 - -
Pral4540g00043 584 MobiDBLite consensus disorder prediction 562 577 - -
Pral4540g00043 584 Gene3D Potassium Channel Kv1.1; Chain A 39 223 IPR011333 -
Pral4540g00043 584 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Pral4540g00043 584 SMART BTB_4 64 190 IPR000210 GO:0005515
Pral4540g00043 584 CDD BTB_POZ_NPR_plant 58 190 - -
Pral4540g00043 584 FunFam regulatory protein NPR3-like 265 405 - -
Pral4540g00043 584 SUPERFAMILY POZ domain 48 189 IPR011333 -
Pral4540g00043 584 Gene3D - 264 406 IPR036770 -
Pral4540g00043 584 Pfam Ankyrin repeats (3 copies) 274 356 IPR002110 GO:0005515
Pral4540g00043 584 SMART ANK_2a 331 360 IPR002110 GO:0005515
Pral4540g00043 584 SMART ANK_2a 268 296 IPR002110 GO:0005515
Pral4540g00043 584 SMART ANK_2a 297 327 IPR002110 GO:0005515
Pral4540g00043 584 Pfam BTB/POZ domain 60 148 IPR000210 GO:0005515
Pral4540g00043 584 PANTHER REGULATORY PROTEIN NPR3 10 573 IPR044292 GO:0009862|GO:2000022|GO:2000031
Pral4540g00043 584 ProSiteProfiles Ankyrin repeat region circular profile. 331 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4540g00043 Pral-Chr4540 295895 302539 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral4540g00043 NPR1_like_C 3.2e-91 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4540g00043 K14508 - gmx:100217338 923.309