Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4540g00042 ATGGAAAGAGGTGGATACGGTTATGGTGGCGCCGGTGGCTACAGGGGAGCTCCGAGAGGCCGGCATGGTGGCAGATCAGGAGGAGGACCACCGCAAGGCCGTGGTGGAAGAGGCTTCCATCACCAACCACAGTCTCAGACTGATCGTTCCTGGGGCGAGGACACTAGGAGAGGCGGTTATGGTAGGGGAGGATCTGATAGAGGTGGATTCAGAGGACGAAGAGGTAGAGGTACTGGCAGAGATGGTGCTGGACCTCCAGTTTGGGTAGCCACTGAATCGGTTCAATCTCGCAGTTCTGCTCCTGATCCAGTTTCAGAATTGGAACGGCTGCAAATTTCACAGCCGGTTCCAAGCTCGTCTCATTCCCAGGAGAGGAAGGATAAGATTTCACCCGTTCATAGGCCTGACCAGGGTGGTACATTAGCAATTCGAACTAGCAAGCTTCGTGTCAATCACTTTCCCGTCAGGTTCAGGCCTGATACTATACTGATGCATTACAATGTTGATGTGAAGCCCATTTCGCCGGCCAGACCAGGTCGACCTCAAAGAATATCGAAGTCTGACCTCTCTATGATTAGGGAGACATTGTTTTCTGGTGACACTAGGCTGCCGTTGGAGCAGACAGTGTATGATGGAGAAAAGAATATTCTTAGTGCGGTTCCTTTGCCAGAAGAAACCTTCACGGTTACTATCTCAGCAGGAGAGGATGAAAAAAGCTATTCTTATAAGGTCACCTTGACACTTGTTAATAAGCTTGAGTATCGCAAGTTGAACCAATACCTCAATAAGGAACTTATGTCAGTTCCCAGAGACATTTTGCAGGGGATGGATATAGTGTTCAAGGAAAACCCAACCAAGCGTACAATCCCTGTGGGACGTAGTTTCTATCCTTCAAATCCTCCTATGTTACATAAGGATCTCCGCCATGGCATAATTGCGCTGGGAGGATTTCAACACAGTTTGAAGCCTACATCTCAGGGTTTGTCCATATGTCTGGACTACTCTGTCTTATCTTTTCGGGAGCGAATGTCGGTCTTGGATTTTCTATATGAGCGTATTAATGGTTTTAGATTGGAGGAATTTGGACGTTTCAGGAATCGTGTTCAGATGGAATTGACTGGGTTGAAGGTAAATGTGATACACCGGCGGACCAGACAGAAATATACCATTTTAGGGCTAACAAACCGTAACACAAGGCATATTACCTTTACTCTTAAGGATCCAGAGGGCCGGAATGAGCCGCAGCAAGTCACAATTCTGGACTATTTCTGGGATAAATACAATAAGGATGTTGAATACAAAGATATTCCTTGTTTGGATTTTGGGAAAGGAGTTAATGTGCCGATGGAGTTTTGCATCTTGGTTGAGGGTCAGAGATACCCCAAAGAGAATTTGGACAGAAATGCTTCTAGGGAGTTGAAAGATATGTCATTGGCCTCTCCAAAGGATAGACGGAGTGTCATACAATCGATGGTAGAGTCAAGTGACGGACCTTGCGGTGGTGGTATTATTCAAAATTTTGGAATGGAAGTCAATACAACCATGACTACCGTCTTAGGACGCATTATTGAGCCCCCAAAATTGAGAGTAGGCGGTCGAAGTGGCCAGATTATGACTGTGACGTTGGATCCGGAGAGATGTCAGTGGAATTTGGTTGGCAAATCTGTGATACAGGGCAAGCCAGTTGAGCGTTGGGGCATTATTGATTTTACAAGATCAGAGTCAGATTCCCGGTTCAAATTAAGGTGCAACGATTTCGTTCCTAAGCTTAAAGGCAAATTCAGAAGTCTGGGCATTAGCATGAATGATCCTCTTTGGGTTGAAGGATGTTCAATGAATCAACTTGCAAATCATGGTTCACTATCTGCATTACTTAAGAGAGTGAACGATCGGGGTCAAGTGCAGTTTATTTTGTGTGCGATGTCTCAGAAACATTATGGGTACAAGACTCTCAAGTGGATTTCAGAGACCATGATTGGTGTGGTGACACAATGTTGTTTGGCTGGTACTGTGAATGCGGGGAAAGATCAAAATCTTACAAATCTTGCTCTCAAGATCAATGCCAAACTCGGAGGCAGTAATGTTGAGCTTGAGAATAGCCTCCCTTGCTTTCCAAGTAACAATGGGCATGTTATGTTTATAGGGGCGGATGTCAATCATCCTGCCGCTCGAGACGTTAATAGTCTATCGATTGCTGCGGTGGTTGGAACTATCAATTGGCCTGCCGCAAATCGTTATGTGGCCCGTGTTAGTCCTCAATCACATCGAAAAGAACAAATATGCAATTTTGGAACAATTTGCCTCGAACTTGTCAATTGTTACAGAAGGTTGAACAAAGTGAGACCGGAAAAAATTGTTATTTTCCGCGATGGGGTGAGTGAGGGTCAGTTTGACATGGTTCTTAACGAAGAGCTACGGGATTTGAAGAGTGTTTTCCAAAAGGAAAAGTATATTCCAACTATAACTTTGATTGTAGCGGCAAAGCGACATCAGACTCGATTGTTTCAGGAGGATCCTTTCGCTGGAAATGTGTCTCCTGGAACAGTGGTGGACACAAAAGTTGTGCATCCTTTTGAGTTTGACTTCTACCTTTGCAGTCACTATGGAAGCTTGGGGACCAGCAAGCCCACTCACTATCATGTCTTGTGGGATGAGCATCGGTTTACATCTGATGACTTGCAGAAGCTCATATATGATATGTGTTTTACATTTGTAAGGTGCACCAAACCTGTATCTTTGGTCCCTCCTGTGTACTATGCTGACCTTGTTGCTTATCGAGGACGGCTATACTATGAAGCAAAGACTGAGTTGGAGAACTCGAAGCCAGGATCGCTTCCTTCTACGTCTGCAAGTGAATGCAACTTTTCCAAGCTGCATGAGCATCTCGAAGACATGATGTTCTTTGTCTAA 2910 0.4509 MERGGYGYGGAGGYRGAPRGRHGGRSGGGPPQGRGGRGFHHQPQSQTDRSWGEDTRRGGYGRGGSDRGGFRGRRGRGTGRDGAGPPVWVATESVQSRSSAPDPVSELERLQISQPVPSSSHSQERKDKISPVHRPDQGGTLAIRTSKLRVNHFPVRFRPDTILMHYNVDVKPISPARPGRPQRISKSDLSMIRETLFSGDTRLPLEQTVYDGEKNILSAVPLPEETFTVTISAGEDEKSYSYKVTLTLVNKLEYRKLNQYLNKELMSVPRDILQGMDIVFKENPTKRTIPVGRSFYPSNPPMLHKDLRHGIIALGGFQHSLKPTSQGLSICLDYSVLSFRERMSVLDFLYERINGFRLEEFGRFRNRVQMELTGLKVNVIHRRTRQKYTILGLTNRNTRHITFTLKDPEGRNEPQQVTILDYFWDKYNKDVEYKDIPCLDFGKGVNVPMEFCILVEGQRYPKENLDRNASRELKDMSLASPKDRRSVIQSMVESSDGPCGGGIIQNFGMEVNTTMTTVLGRIIEPPKLRVGGRSGQIMTVTLDPERCQWNLVGKSVIQGKPVERWGIIDFTRSESDSRFKLRCNDFVPKLKGKFRSLGISMNDPLWVEGCSMNQLANHGSLSALLKRVNDRGQVQFILCAMSQKHYGYKTLKWISETMIGVVTQCCLAGTVNAGKDQNLTNLALKINAKLGGSNVELENSLPCFPSNNGHVMFIGADVNHPAARDVNSLSIAAVVGTINWPAANRYVARVSPQSHRKEQICNFGTICLELVNCYRRLNKVRPEKIVIFRDGVSEGQFDMVLNEELRDLKSVFQKEKYIPTITLIVAAKRHQTRLFQEDPFAGNVSPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHRFTSDDLQKLIYDMCFTFVRCTKPVSLVPPVYYADLVAYRGRLYYEAKTELENSKPGSLPSTSASECNFSKLHEHLEDMMFFV 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4540g00042 969 Gene3D - 522 699 - -
Pral4540g00042 969 Gene3D - 706 969 IPR036397 GO:0003676
Pral4540g00042 969 ProSiteProfiles PAZ domain profile. 371 456 IPR003100 GO:0005515
Pral4540g00042 969 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 145 935 - -
Pral4540g00042 969 CDD Piwi_ago-like 503 931 IPR045246 -
Pral4540g00042 969 ProSiteProfiles Piwi domain profile. 636 932 IPR003165 GO:0003676
Pral4540g00042 969 SMART PAZ_2_a_3 347 482 IPR003100 GO:0005515
Pral4540g00042 969 Pfam Piwi domain 637 931 IPR003165 GO:0003676
Pral4540g00042 969 CDD PAZ_argonaute_like 343 455 - -
Pral4540g00042 969 SUPERFAMILY Ribonuclease H-like 628 932 IPR012337 -
Pral4540g00042 969 Gene3D paz domain 338 460 - -
Pral4540g00042 969 SMART Piwi_a_2 636 932 IPR003165 GO:0003676
Pral4540g00042 969 Pfam PAZ domain 362 471 IPR003100 GO:0005515
Pral4540g00042 969 MobiDBLite consensus disorder prediction 50 78 - -
Pral4540g00042 969 MobiDBLite consensus disorder prediction 1 141 - -
Pral4540g00042 969 Pfam N-terminal domain of argonaute 146 279 IPR032474 -
Pral4540g00042 969 SUPERFAMILY PAZ domain 339 493 IPR036085 GO:0005515
Pral4540g00042 969 SMART DUF1785_2 289 342 IPR014811 -
Pral4540g00042 969 Pfam Argonaute linker 1 domain 290 340 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4540g00042 Pral-Chr4540 290496 294866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4540g00042 91 968 Eukaryotic Initiation Factors Gene Family AT1G48410 33.751 9.52e-141 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4540g00042 K11593 - gmx:100805250 1112.83