Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4540g00038 ATGGAGGATCAGGCGGGTTTAGGAGGTGGAGCCTCTGTCAATATCGGAAGGGAAGAGGAAGAAGATGAATTTTGCAGTTGTTGTTGTGAAGAAGAAGAAGAATTATGGAAAGAATCTGAGCAGCCGGTGGTAGAAAAATCGAAGGAGGACTGTGATGAATCTTCAGTAAAAATGTTCTTCAAGGGCTTGTCTATAGCTGGTGTTGAAAATTCCACTTCGGGGTATTCTGGAATTGGAGTGGTCATGGAAAGACCATCTGGTCTTCCACCTATCCAGGTGCAGAAAAAACTCGATTTTTATGCAGAAAAGCTATTAGCTGAATACTTGGCTCTCATCGATGGCTTGCTGGAAGCTATGCAGAATAACATCCACCGGGTTTACGCTTTTACAGATTCTGAGTTATTGTACGATCAGATAACATTTGAGAAGAATCTTGAAATGCCACTTTTGAAAGCACTGAGAGAGAGGGCTCTGGAGCATGCTAATAATTTTGAATCATTTGTCCTTAATCTTGTTCCCAGCATTGATCTTGAGAAACCGCTGCAATTAGCTAAAGTAGCTATTGGCCTTGTCTCTCTTCCTATAGATGGTGGGAAAGTGCTTGAAAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGGCAATAATGATCGCCATGAAATGTTCGCACAAGTTTTGTTCGCATTGTTTGAGAGCTTATATTGATGGAAAGGTACAGTCTTGTCAAGTACCTATAAGATGCCCTCAACCAAGATGCAAATATTACGTCTCTACTGCAGAATGCAGGTCTTTTCTTCCATTGACCTCTTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCAAATGTGTCAGATAGAATTTACTGCCCATTTCCAAATTGTTCCGTTCTCCTTGACCCTCGTGAATGTTTATCAGCTAGGGCAAGTTCATCTAGCCAATCAGACAATTCTTGTGTTGAGTGTCCTGTTTGTGAGAGGTTTATCTGTGTGGACTGCGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAGTACCAGAATTTACCGGAGGAGGAAAGAGATGCTTCTGACATTACCTTGCATCGCCTAGCTCAAAATAAACGATGGAAGCGTTGTCAGCAGTGTCGTCGGATGATTGAACTTACTCATGGTTGCTATCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCCTGTGGAGCGGAATACAGGGATGGCCAACAGACGTGTCAGTGTGTGTTTTGGGATGAAAACAACTCTGAAGACTCAGTGACTCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTTAATTCTCTCCCCATGATCATGGATGCATACTCAGACCAAGAACGTTCACAGCTTGCACTTATACAACGATTCCTTGCCGGGGGTTTCAGTCTGAGTGACCATCATCCTTGCCAATCCCCTCCCCGTTGTACAGACTCCTATGGTGACGCCATGAAGGATCTACATCAGCTTCCGTGGCTCGAGCGATTTGTCTCTGTGATAAGTGACAACTACTATGAAGACTATATTCAGTAA 1551 0.4339 MEDQAGLGGGASVNIGREEEEDEFCSCCCEEEEELWKESEQPVVEKSKEDCDESSVKMFFKGLSIAGVENSTSGYSGIGVVMERPSGLPPIQVQKKLDFYAEKLLAEYLALIDGLLEAMQNNIHRVYAFTDSELLYDQITFEKNLEMPLLKALRERALEHANNFESFVLNLVPSIDLEKPLQLAKVAIGLVSLPIDGGKVLESCSICCEDKPLAIMIAMKCSHKFCSHCLRAYIDGKVQSCQVPIRCPQPRCKYYVSTAECRSFLPLTSFESLEKALAEANVSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVDCEVPWHSSMSCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCVFWDENNSEDSVTHSLQESEQWAWETFNSLPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPCQSPPRCTDSYGDAMKDLHQLPWLERFVSVISDNYYEDYIQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4540g00038 516 FunFam RBR-type E3 ubiquitin transferase 199 284 - -
Pral4540g00038 516 FunFam RBR-type E3 ubiquitin transferase 56 191 - -
Pral4540g00038 516 ProSiteProfiles TRIAD supradomain profile. 200 416 IPR044066 -
Pral4540g00038 516 SUPERFAMILY RING/U-box 202 280 - -
Pral4540g00038 516 Gene3D - 57 190 IPR036397 GO:0003676
Pral4540g00038 516 SUPERFAMILY RING/U-box 354 418 - -
Pral4540g00038 516 ProSiteProfiles Zinc finger RING-type profile. 204 251 IPR001841 -
Pral4540g00038 516 SUPERFAMILY Ribonuclease H-like 72 173 IPR012337 -
Pral4540g00038 516 SMART ibrneu5 351 410 IPR002867 GO:0008270
Pral4540g00038 516 SMART ibrneu5 271 341 IPR002867 GO:0008270
Pral4540g00038 516 FunFam RBR-type E3 ubiquitin transferase 339 464 - -
Pral4540g00038 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 284 IPR013083 -
Pral4540g00038 516 CDD BRcat_RBR_unk 282 344 - -
Pral4540g00038 516 CDD Rcat_RBR_unk 367 403 - -
Pral4540g00038 516 Pfam Reverse transcriptase-like 67 173 IPR002156 GO:0003676|GO:0004523
Pral4540g00038 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 57 463 IPR031127 GO:0004842|GO:0016567
Pral4540g00038 516 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Pral4540g00038 516 Gene3D - 339 465 - -
Pral4540g00038 516 Pfam IBR domain, a half RING-finger domain 361 410 IPR002867 GO:0008270
Pral4540g00038 516 Pfam IBR domain, a half RING-finger domain 280 341 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4540g00038 Pral-Chr4540 257248 261791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4540g00038 55 401 C3H Transcription Factor Family AT2G19610 27.624 2.57e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4540g00038 - - gmx:100783040 826.624