Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4538g00002 ATGAATTCTGAAAGCATCAATATCCAGAGGGTTCTTACACCCCCCACTCATCACCCTCAGGTCGGCTCTAACCCTCCAGCAACTGCTAATGGCACTCACTTGCCAACCACGCAGCAGGCTTTTTCCCCAGCAAATACGCCATACCCTCTCACCATCACTTCTCCTTCAATAACTCCCGCCACTCCAATCCCAACACGCCGCATGATCTTCTCCAATGCAGAAAAAGGTTCGAGAGGAGAGAGGGTGCAAATGGGAAACGCAGTGTATGAATATAGATGTAATACAGAGCATGTGAGAAGTTCTGAGGAAGGAAGAAGAAAGTACAGTGGAGTGAGACAAAGGCCATGGGGGAAGTGGGCAGCTGAAATCAGAGATCCTTTCAAAACTGCCCGAGTTTGGCTTGGCACTTTCGACACGGCGGAGACGGCTGCCCGGGCATACCAAAAAGCTGCCCGAGTTTGGCTATATTATTAA 474 0.4979 MNSESINIQRVLTPPTHHPQVGSNPPATANGTHLPTTQQAFSPANTPYPLTITSPSITPATPIPTRRMIFSNAEKGSRGERVQMGNAVYEYRCNTEHVRSSEEGRRKYSGVRQRPWGKWAAEIRDPFKTARVWLGTFDTAETAARAYQKAARVWLYY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4538g00002 157 SMART rav1_2 107 153 IPR001471 GO:0003700|GO:0006355
Pral4538g00002 157 CDD AP2 107 151 IPR001471 GO:0003700|GO:0006355
Pral4538g00002 157 SUPERFAMILY DNA-binding domain 107 153 IPR016177 GO:0003677
Pral4538g00002 157 ProSiteProfiles AP2/ERF domain profile. 107 157 IPR001471 GO:0003700|GO:0006355
Pral4538g00002 157 PANTHER DNA-BINDING DOMAIN 77 152 IPR044808 GO:0003700|GO:0009873
Pral4538g00002 157 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Pral4538g00002 157 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Pral4538g00002 157 MobiDBLite consensus disorder prediction 1 61 - -
Pral4538g00002 157 Gene3D AP2/ERF domain 106 155 IPR036955 GO:0003700|GO:0006355
Pral4538g00002 157 Pfam AP2 domain 107 151 IPR001471 GO:0003700|GO:0006355
Pral4538g00002 157 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4538g00002 Pral-Chr4538 284712 285600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4538g00002 105 151 AP2-EREBP Transcription Factor Family AT2G33710 82.979 1.27e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral4538g00002 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4538g00002 - - pcin:129309833 133.65