Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4535g00010 ATGGCGCCGAGTATAAGAAATCTACAGCTAACTTCCCTCGCAACCGCCGCTGCTGCCGACGATGGTGATGCCGATGGCATGGAGGAAGTGCGGCTTTTGGACTCCTACGAAGATAAAAACTACAATGGTTCTGATGGAATTGAGGAAGGGCTGAAGCGAATTCATGTCAGAATCACCGGCATGACCTGCGCTGCTTGCTCCAATTCCGTCGAAGCAGCTCTGAATGCCGTCGATGGCGTCATCAGCGCTTCTGTGGCTTTGCTTCAGAACAAGGCTGATGTGGTTTACAACCCGTCTCTGGCTAAGGATGTAGATATCAAAAATGCAATTGAAGATGCAGGGTTTGAGGCAGAGATATTACCTGAACCCAGTGGTGATGCGCTCAGAAAAAAGTCGCACAGAACCTTGGTGGGACAGTTCACGATTGGTGGTATGACATGTGCAGCCTGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTCAAAAGGGCTGTGGTTGCTTTGGCTACTTCATTAGGAGAAGTTGAATATGATCCTAATGTAATTAACAAAGAGGATATAATCAGTGCAATTGAAGATGCTGGTTTTGAAGGTTCATTTGTGCAGAGCAGCGAGCAGGATAAAATAACTTTATCAGTTGTTGGTGCATACAGCGTGATTGATGTACAAATCTTGGAAGGCGTTCTCAGCAACATGAAAGGAGTGAGGCAGTTTCGTTTTGACCAGATATCAAGTGAACTGGTGGTTCTTTTTGATCCTGAAGTTTTCAGCTCTAGATCCTTAGTTGATGAGATTGAAAGGGAAAGCAACGGAAAGTTCAAATTACGTGTCAGAAGCCCATATACAAGACTAGCTTCCAAAGATGTTGAAGAGACCTCGGCTATGTTTTGGCTTTTTACATCCAGCCTTTCTCTTAGTATTCCTCTCTTCTTCATGCGTGTAGTCTGTCCTCATATACCCATGGTATATTCGTTATTACTTTGGAGATGTGGACCTTTCCTCATGGGCGACTGGTTGAAGTGGGCTTTGGTGAGTGTGATTCAATTTGTAATTGGGAAGCGCTTCTACATTGCTGCTGGCCGAGCTCTAAGAAATGGTTCAACTAACATGGATGTCTTGGTTGCATTGGGAACTACAGCATCTTATGTTTATTCTGTTTGTGCTCTACTGTATGGTGCTCTTACTGGATTTTGGTCTCCAACATATTTTGAGACCAGTTCCATGCTCATAACATTTGTATTGTTGGGTAAGTACTTGGAATGCCTTGCCAAGGGGAGGACATCAGATGCCATCAAGAAGTTAGTAGAACTTGCTCCCGCAACAGCTTTATTGGTTGTGAAAGATAAAGGTGGAAGATCTATTGAAGAGAGGGAAATAGATTCTCTGCTCATTCAACCCGGCGACACATTGAAAGTTCTCCCTGGTGCAAAGGTTCCTGCTGATGGCATTGTTACATGGGGCTCAAGTTACATAAATGAGAGCATGGTGACTGGTGAATCTGTTCCTGTTTCGAAGGAGGTGAATGCAACTGTCATTGGAGGTACAATAAATTCACATGGCATCCTTCTCATTGAAGCTACCAGAGTAGGATCTGATGCAGTTTTGAGTCAGATAATTAGCTTGGTTGAGACAGCTCAGATGTCCAAGGCCCCCATTCAGAAATTTGCTGATTATGTAGCAAGTATATTTGTTCCCACAGTTGTTGCCTTGGCCCTGTTGACATTTTGGAGTTGGTATATTGCTGGGGCTCTCGGAGCTTACCCTGAAGAATGGCTGCCAGAAAATGGAAATCATTTTGTTTTTGCCCTAATGTTTTCAATATCTGTAGTGGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACAGCAGTGATGGTAGCTACAGGGGTTGGGGCTAACAACGGGGTGTTGATCAAAGGAGGAGATGCCTTGGAGAGGGCTCAGATGGTGAAGTATGTGATATTCGATAAAACTGGCACTTTAACTCAGGGGAAAGCTAGCTTTACCGCTGCCAAGGTATTCACAGGAATGGATCGTGGAGAATTTCTAAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAGCACCCACTGGCTAAAGCAATAGTAGCATATGCACGTCATTTTCATTTCTTTGATGAATCCTCTGCAACTAATGGTCTCAAAGATGATGCCAATGAGTTGAAGTCTGGGTGGCTTTATGATGTCTCTGACTTCTTGGCTCTTCCAGGAAGAGGTGTTCAGTGTTTCATAGATGGGACGCGTATATTGGTTGGTAACAGGAAACTAATGGAGGAAAGTGGCATAGATATTCCAACTGAAGTGGAAAATTTTGTGGTCAATTTGGAAGAAAGTGCAAACACAGGGATTCTGGTTGCATATGGTGATGGGCTAACTGGAGTTATCGGGGTTGCAGACCCACTGAAGAGAGAGGCTTCTGTGGTTATTGAGGGCCTCAAGAAAATGGGTGTGAGACCTATTATGGTTACAGGAGATAACTGGAGAACAGCTCAAGCTGTTGCCAAGGAGGTGGGCATTCAAGATGTTAGAGCTGAGGTTCTGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAGAAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGCATCAATGACTCTCCTGCATTAGCTGCTGCTGATGTTGGTATTGCCATTGGGGCTGGGACTGATATTGCGATAGAAGCTGCTCAATATGTGTTGATGAGGAACAATTTGGAAGATGTAATCACAGCTATTGATCTCTCTAGGACGACCTTGTCTCGAATTCGATTGAATTATTTCTTCGCCATGGCCTACAATGCGGTTGCCATACCAGTTGCTGCTGGGGTTCTCTATCCTTCCCTTGGGATCAAGCTGCCTCCATGGGTCGCTGGTACATGCATGGCTCTCTCATCCGTAAGTGTTGTCTGCTCTTCTTTGCTTCTCAGGAGATATAGAAGACCTAAACTTACTGAAATACTTGAAATAATTGTGGATTAG 3018 0.446 MAPSIRNLQLTSLATAAAADDGDADGMEEVRLLDSYEDKNYNGSDGIEEGLKRIHVRITGMTCAACSNSVEAALNAVDGVISASVALLQNKADVVYNPSLAKDVDIKNAIEDAGFEAEILPEPSGDALRKKSHRTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDPNVINKEDIISAIEDAGFEGSFVQSSEQDKITLSVVGAYSVIDVQILEGVLSNMKGVRQFRFDQISSELVVLFDPEVFSSRSLVDEIERESNGKFKLRVRSPYTRLASKDVEETSAMFWLFTSSLSLSIPLFFMRVVCPHIPMVYSLLLWRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSSMLITFVLLGKYLECLAKGRTSDAIKKLVELAPATALLVVKDKGGRSIEEREIDSLLIQPGDTLKVLPGAKVPADGIVTWGSSYINESMVTGESVPVSKEVNATVIGGTINSHGILLIEATRVGSDAVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVALALLTFWSWYIAGALGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASFTAAKVFTGMDRGEFLKLVASAEASSEHPLAKAIVAYARHFHFFDESSATNGLKDDANELKSGWLYDVSDFLALPGRGVQCFIDGTRILVGNRKLMEESGIDIPTEVENFVVNLEESANTGILVAYGDGLTGVIGVADPLKREASVVIEGLKKMGVRPIMVTGDNWRTAQAVAKEVGIQDVRAEVLPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGIAIGAGTDIAIEAAQYVLMRNNLEDVITAIDLSRTTLSRIRLNYFFAMAYNAVAIPVAAGVLYPSLGIKLPPWVAGTCMALSSVSVVCSSLLLRRYRRPKLTEILEIIVD 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4535g00010 1005 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 30 1001 - -
Pral4535g00010 1005 Gene3D - 759 810 IPR023299 GO:0000166
Pral4535g00010 1005 Gene3D - 666 758 IPR023299 GO:0000166
Pral4535g00010 1005 NCBIfam copper ion binding protein 139 200 IPR006122 GO:0005507
Pral4535g00010 1005 NCBIfam copper ion binding protein 55 117 IPR006122 GO:0005507
Pral4535g00010 1005 SUPERFAMILY HMA, heavy metal-associated domain 49 122 IPR036163 GO:0046872
Pral4535g00010 1005 Gene3D - 626 936 IPR023214 -
Pral4535g00010 1005 PRINTS Copper-transporting ATPase 1 signature 53 78 - -
Pral4535g00010 1005 PRINTS Copper-transporting ATPase 1 signature 79 102 - -
Pral4535g00010 1005 PRINTS Copper-transporting ATPase 1 signature 108 128 - -
Pral4535g00010 1005 FunFam Copper-transporting ATPase 1, putative 427 549 - -
Pral4535g00010 1005 SUPERFAMILY HAD-like 658 985 IPR036412 -
Pral4535g00010 1005 Gene3D - 427 549 - -
Pral4535g00010 1005 CDD HMA 139 200 IPR006121 GO:0046872
Pral4535g00010 1005 FunFam Probable copper-transporting ATPase HMA5 781 936 - -
Pral4535g00010 1005 Pfam E1-E2 ATPase 442 638 - -
Pral4535g00010 1005 SFLD p-type atpase 641 930 IPR044492 -
Pral4535g00010 1005 Gene3D - 138 203 - -
Pral4535g00010 1005 NCBIfam heavy metal translocating P-type ATPase 373 988 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pral4535g00010 1005 ProSitePatterns Heavy-metal-associated domain. 142 171 IPR017969 GO:0046872
Pral4535g00010 1005 NCBIfam HAD-IC family P-type ATPase 412 681 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4535g00010 1005 NCBIfam HAD-IC family P-type ATPase 779 960 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4535g00010 1005 FunFam Copper-exporting P-type ATPase A 50 120 - -
Pral4535g00010 1005 SUPERFAMILY Calcium ATPase, transduction domain A 459 545 IPR008250 -
Pral4535g00010 1005 FunFam Copper-exporting P-type ATPase 759 810 - -
Pral4535g00010 1005 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872
Pral4535g00010 1005 CDD HMA 56 118 IPR006121 GO:0046872
Pral4535g00010 1005 SFLD Haloacid Dehalogenase 641 930 - -
Pral4535g00010 1005 CDD P-type_ATPase_Cu-like 300 975 - -
Pral4535g00010 1005 Gene3D - 51 122 - -
Pral4535g00010 1005 PRINTS P-type cation-transporting ATPase superfamily signature 902 914 - -
Pral4535g00010 1005 PRINTS P-type cation-transporting ATPase superfamily signature 659 673 - -
Pral4535g00010 1005 PRINTS P-type cation-transporting ATPase superfamily signature 826 836 - -
Pral4535g00010 1005 PRINTS P-type cation-transporting ATPase superfamily signature 804 815 - -
Pral4535g00010 1005 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Pral4535g00010 1005 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Pral4535g00010 1005 Pfam Heavy-metal-associated domain 140 200 IPR006121 GO:0046872
Pral4535g00010 1005 Pfam Heavy-metal-associated domain 56 116 IPR006121 GO:0046872
Pral4535g00010 1005 Pfam haloacid dehalogenase-like hydrolase 655 893 - -
Pral4535g00010 1005 FunFam Copper-transporting ATPase RAN1 666 758 - -
Pral4535g00010 1005 FunFam Copper-exporting P-type ATPase A 134 204 - -
Pral4535g00010 1005 ProSiteProfiles Heavy-metal-associated domain profile. 136 202 IPR006121 GO:0046872
Pral4535g00010 1005 ProSitePatterns Heavy-metal-associated domain. 58 88 IPR017969 GO:0046872
Pral4535g00010 1005 SUPERFAMILY Calcium ATPase, transmembrane domain M 398 951 IPR023298 -
Pral4535g00010 1005 SUPERFAMILY HMA, heavy metal-associated domain 138 207 IPR036163 GO:0046872
Pral4535g00010 1005 ProSitePatterns E1-E2 ATPases phosphorylation site. 661 667 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4535g00010 Pral-Chr4535 67094 74042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4535g00010 1 1005 Primary Pumps ATPases AT5G44790 74.136 0.0 1496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4535g00010 K17686 - gmx:100804960 1605.5