Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4534g00003 ATGTGTCGTCTTCTCCATGGCCTCCTCTTTCTTTATCTACCTTCCCTCCCTGCTTCCCCTGCTTCCCTCGTCCCCCTCATGGCCGATTCTCCTTCTCCTTCTCCTTCTCCCTCCTCCATGACCACCACCACCACCACCACCCTCCACCATCCCTCCTCCGCCTTCAATCTCACTCTCCTCATCGCCGCCATTGTCTGCGCCTTCCTCTGCGCCCTCGGCCTCAACACCATGCTCCACTGCGTCTTCCAATGCGCCGTCACTGAACCGCTCCAGTGGATCGCCTCCCGCCGAATCAATTCCGGCCTCAAGAAGAAAGACATGGTGGCTCTCCCGACTTCCACTTATTACGCCAACCCTACCTCTTCGTCTTCTACTGCAACTTCTGCTTCTAATTGTGCGATTTGCTTGGCGGATTTCTGCGACGGAGATAGAATTAGATTCCTCCCAAAGTGCAGTCACACATTTCACGTGGCCTGTATCGATAAGTGGTTGCTTTCTCATTCATCTTGCCCAACTTGCCGCCATTTTCTGAAATCCTCGAGTGATTCACTTAACACCCTGCATCTTATGATACCATAG 579 0.532 MCRLLHGLLFLYLPSLPASPASLVPLMADSPSPSPSPSSMTTTTTTTLHHPSSAFNLTLLIAAIVCAFLCALGLNTMLHCVFQCAVTEPLQWIASRRINSGLKKKDMVALPTSTYYANPTSSSSTATSASNCAICLADFCDGDRIRFLPKCSHTFHVACIDKWLLSHSSCPTCRHFLKSSSDSLNTLHLMIP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4534g00003 192 Pfam Ring finger domain 131 174 IPR001841 -
Pral4534g00003 192 CDD RING-H2_EL5-like 132 174 - -
Pral4534g00003 192 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pral4534g00003 192 FunFam E3 ubiquitin-protein ligase ATL6 91 180 - -
Pral4534g00003 192 SUPERFAMILY RING/U-box 131 180 - -
Pral4534g00003 192 PANTHER RING-H2 FINGER PROTEIN ATL78 37 180 IPR044602 GO:0016567|GO:0016740
Pral4534g00003 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 179 IPR013083 -
Pral4534g00003 192 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4534g00003 Pral-Chr4534 27216 28038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4534g00003 29 177 C3H Transcription Factor Family AT2G17450 38.411 1.73e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4534g00003 - K19040 gmx:100779286 201.445