Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4533g00027 ATGGGTGATCCGACTCATCTCGAGCAGATGGGCAAAGAACTCAAGTGTCCAATTTGTTGGAGTTTACTGGATTCTGCAGTTTCTCTTACATGCAATCATGTATTCTGCAACTCATGTATTGTGAAATCAATGAAATCAGGTTCTAGTTGCCCCGTGTGTAAACTGCCCTTCCGGCGTAGAGAGATTCGCGCTGCTCCTCATATGGATAGCTTGGTGAGTATCTACAAAAGCATGGAAGTTTCTTCGGGAGTTAACATATTCGTCACTCAGAACGTACCTGGTGCAAAATTATCAGATGGAGAAAAGCAATGTGATGGTGATACCAATTGTGGGGATAAGGTTGCTGGTGATACTTATCAAAATCATTCAGAGACGCGACAGAAACGCAAAAGGAAGGGATCGAGGAAAGAGACTGAGGCCAACAAGAAGAATTCTGGTGCTGACTCTGTAAAACCTACCTTTCCAGCAAAGAAAAGGGTTCAAGTGCCACAAAGTCCTCTTTCAAAAACTCCATTTAAGAATGCAGGGCTTGAGCCTTCTCCAAGTGAAATTATCAAAAAGGGAAGGAAAGAGGGTTTGGCCACGTCAAATGGGAGGCCTGTCAGAAATGAGAAAGAAGAAGTAGCTCTTTCGCCCTTCTTCTGGTTGAGAGATGAAAAAGATGGGGAAAAGTCAAGTCAGGACACCGTTGGGGGTAAAGTCAGCGATACACCAACACCAAATCTTCCTTCATTCAGTGATCTCAGGGACTCTGACGATGAAAACTCTTCTAAAGCGACTCCATCAGTTGAAGATACTGGTGAGGTTGATGAAAATCAAGTGAAGGATTATGTACCTGATTCCCTGGAACTTGAAGCAAATAAATTAGGTGCTGATAATACAGAATTTGAGAGTTTGAAACAAGGAAATGATTTGAACACGAAGACACCTGGGGCGGCTTCTCTTCAAAAGAAATCAAGAAAGAGAGGCAGGAAGGCAACCGAAAAGCCCCAGAAAGAGCAGACTGAAAAAAATGGAGCCTCTGTTAATGGAACTGACTTCATTCCAGAGCGATTACCAAAAGTCAGTCACGAGCAAACATGGGACAATAAACGTGATTCTTCAAATCAGGGGAGGACGAATAGAAGAGGTAAACAAGAACATGAGAAGAATTATAATGTGAAAAATTCTAAGAAAAGCCAGGGGAGAAGGGCCGGGAAACAAAAGCTGGATAATTTACAAAAGATAGTTGAAGACCCATCTTCAATGCAAAACCGTAACAACGAGCATGCTGGTCATCAGTTATCAAGTCTCCAGATGGATAATAATGGAAAGCCGTTCAGTAGCAGGCAAATAGAAATTAGTTCTGGCAGAAAATCCAATTCCTGCAACAGAGGATTGAGGAATAATAAAAGGTTAAAAGTTTCATCTGATTGCATCTCCCAGCAAGCACATGATGAAGAAACTCAGCCTACCGAGAGGATTCATCAACACCCTGAAAGTGGGGTTTTGAGTGAATCATTTAAAGAGAAACACCATCCTGGGACTGATGTGGTTTTACGGAAATGTGAGACCCATATCAAGAAGTTCCAATGCGCTTTCTGTCTGTCATCAGAAGAATCAGAGGCTTCTGGCCAGATGGTGCATTACTATAAGGGCAAGCCTGTTGCTGCAGATCATGAAGGAGGATCAAAAGTCATACATTCTCACAGGAATTGCACTGAATGGGCCCCCAATGTATATTTTGAAGATGATATTGCAATTAATCTTGAGGCTGAAACAAGCAGAAGTCGAAGAATTAAATGTAGTTTTTGTGGACTTAAGGGGGCGGCACTAGGTTGTTTTGAAAAAACTTGCCGCAGGAGCTTCCATGTTACCTGTGCCAAGTATACTTCTCAGTGTCGATGGGATATGGATAACTTTGTGATGCTCTGTCCTCCGCATGCTTCTTTGAAGTTGCCTTGTGATAGTACAGGAACGCAAAACAGAAGCAAGAAATGCACAGCTAGAGATTTTGTCGGGCGAGGAAATCAGCGCAACACTGCTGGCAAGAATGACACTGCCCAAAATCTGAATGCTCGTGGGTCATATAAGAAAGTTGTTCTCTGTTGTTCAGCTTTATCTGGTCCAGAGAGGGATGTTGTTTCTGAATTTGAAAGAGGTGCCAAGGTAACAGTTTTGAAAAAGTGGGATGCAAGTGTGACCCATGTGATAGCATCAACAGATGAAAATGGGGCATGCAAAAGAACCCTCAAAGTACTGCTGGGTATCCTCGAGGGAAAATGGATTCTCAATGTGGAATGGATTAAAGCATCCATGCAAGCAATGGAACCTGTTGATGAGGAGCGTTATGAAATTAATGTGGACATCCATGGAATCCAGGATGGCCCTCGTCTCGGACGACTGAGAGTATTGAATAAGCAACCAAAGCTTTTTGATGGCTACAAGTTTTATTTTATGGGTGATTTTATGCCATCGTATAAGGGTTACCTACAGGACCTTGTCACGGCTGCTGGAGGGATCTTTCTGCACAGAAAACCATTATGTCGTGACCAAAAAGCATCATTATCACCCGATATGCATCCACCCCAAACCTTCATTATTTACAGCCTCGAACTTCCTGAAAAATTTGGTCCCCTAAAAAGGGAAACAATTCTCAGTCAAAGGCGAAATGATGCGGAGGCTTTGGCAAGGTCAACTGGTTCAAAAGCGGCGAGTAATACATGGATTTTAAATTCTATTGCAGCCTGCAGGTTGCAAAGCCTTGTTGAATAA 2754 0.4274 MGDPTHLEQMGKELKCPICWSLLDSAVSLTCNHVFCNSCIVKSMKSGSSCPVCKLPFRRREIRAAPHMDSLVSIYKSMEVSSGVNIFVTQNVPGAKLSDGEKQCDGDTNCGDKVAGDTYQNHSETRQKRKRKGSRKETEANKKNSGADSVKPTFPAKKRVQVPQSPLSKTPFKNAGLEPSPSEIIKKGRKEGLATSNGRPVRNEKEEVALSPFFWLRDEKDGEKSSQDTVGGKVSDTPTPNLPSFSDLRDSDDENSSKATPSVEDTGEVDENQVKDYVPDSLELEANKLGADNTEFESLKQGNDLNTKTPGAASLQKKSRKRGRKATEKPQKEQTEKNGASVNGTDFIPERLPKVSHEQTWDNKRDSSNQGRTNRRGKQEHEKNYNVKNSKKSQGRRAGKQKLDNLQKIVEDPSSMQNRNNEHAGHQLSSLQMDNNGKPFSSRQIEISSGRKSNSCNRGLRNNKRLKVSSDCISQQAHDEETQPTERIHQHPESGVLSESFKEKHHPGTDVVLRKCETHIKKFQCAFCLSSEESEASGQMVHYYKGKPVAADHEGGSKVIHSHRNCTEWAPNVYFEDDIAINLEAETSRSRRIKCSFCGLKGAALGCFEKTCRRSFHVTCAKYTSQCRWDMDNFVMLCPPHASLKLPCDSTGTQNRSKKCTARDFVGRGNQRNTAGKNDTAQNLNARGSYKKVVLCCSALSGPERDVVSEFERGAKVTVLKKWDASVTHVIASTDENGACKRTLKVLLGILEGKWILNVEWIKASMQAMEPVDEERYEINVDIHGIQDGPRLGRLRVLNKQPKLFDGYKFYFMGDFMPSYKGYLQDLVTAAGGIFLHRKPLCRDQKASLSPDMHPPQTFIIYSLELPEKFGPLKRETILSQRRNDAEALARSTGSKAASNTWILNSIAACRLQSLVE 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4533g00027 917 MobiDBLite consensus disorder prediction 429 503 - -
Pral4533g00027 917 SUPERFAMILY BRCT domain 804 914 IPR036420 -
Pral4533g00027 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Pral4533g00027 917 Pfam PHD-like zinc-binding domain 563 641 - -
Pral4533g00027 917 SUPERFAMILY RING/U-box 6 77 - -
Pral4533g00027 917 FunFam Breast cancer associated RING 1 519 644 - -
Pral4533g00027 917 MobiDBLite consensus disorder prediction 228 246 - -
Pral4533g00027 917 Pfam BRCA1 C Terminus (BRCT) domain 698 765 IPR001357 -
Pral4533g00027 917 Gene3D BRCT domain 801 910 IPR036420 -
Pral4533g00027 917 MobiDBLite consensus disorder prediction 115 404 - -
Pral4533g00027 917 ProSiteProfiles BRCT domain profile. 800 917 IPR001357 -
Pral4533g00027 917 ProSiteProfiles BRCT domain profile. 714 779 IPR001357 -
Pral4533g00027 917 MobiDBLite consensus disorder prediction 429 479 - -
Pral4533g00027 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 519 644 IPR013083 -
Pral4533g00027 917 ProSiteProfiles Extended PHD (ePHD) domain profile. 522 642 IPR034732 -
Pral4533g00027 917 ProSiteProfiles Zinc finger RING-type profile. 16 54 IPR001841 -
Pral4533g00027 917 FunFam Breast cancer type 1 susceptibility protein homolog 690 796 - -
Pral4533g00027 917 Gene3D BRCT domain 689 795 IPR036420 -
Pral4533g00027 917 MobiDBLite consensus disorder prediction 351 389 - -
Pral4533g00027 917 CDD BRCT_Bard1_rpt1 693 772 - -
Pral4533g00027 917 CDD ePHD 525 641 - -
Pral4533g00027 917 SMART BRCT_7 688 769 IPR001357 -
Pral4533g00027 917 SMART BRCT_7 802 910 IPR001357 -
Pral4533g00027 917 MobiDBLite consensus disorder prediction 247 282 - -
Pral4533g00027 917 SMART PHD_3 594 642 IPR001965 -
Pral4533g00027 917 MobiDBLite consensus disorder prediction 294 314 - -
Pral4533g00027 917 SMART ring_2 595 641 IPR001841 -
Pral4533g00027 917 SMART ring_2 16 53 IPR001841 -
Pral4533g00027 917 SUPERFAMILY BRCT domain 692 787 IPR036420 -
Pral4533g00027 917 Pfam Zinc finger, C3HC4 type (RING finger) 15 53 - -
Pral4533g00027 917 MobiDBLite consensus disorder prediction 200 227 - -
Pral4533g00027 917 MobiDBLite consensus disorder prediction 480 503 - -
Pral4533g00027 917 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Pral4533g00027 917 FunFam Breast cancer associated RING 1 1 86 - -
Pral4533g00027 917 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 5 914 IPR031099 GO:0006281|GO:0006974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4533g00027 Pral-Chr4533 156663 163891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4533g00027 11 66 RAD5 or RAD16-like Gene Family AT5G22750 36.207 9.63e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4533g00027 K10683 - gmx:100789372 1017.68