Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4533g00024 ATGGGTCGTCGAAAAATCGAGATGAAGCTGGTGAGAGACTCGGGCTCGAGACAAGTCACGTTCTCCAAGCGTCGCAACGGTGTCTTCAAAAAAGCAAACGAGCTCGCGACCTTATGCGGAGCAGAAATCGCCGTGGTCGCTTTCTCTCCCGGCGGAAAACCTTTCTCCTACGGCCAACCAAGCGTCGATACCGTCGCCAACAGGTTCCTCCGCCGCGGTTCCGCCATAAGCAACCCCAACAACAACAATGGCGGCGGATCAAAGGGTCTTAGAGCAAATGGTGGTGATGTGATTGAGAAGCTGAACCAGAAGCTTATGAATCTGGTGAACGAGAGTCAGGCGGAGAAGAAGAAGGGAGAGATGCTTGACGAGAGGCTGAAGAAGATGAACTTGACTCGTCAGGGAAAGCTGCCATTGGAAGGTCTGAATAGGGATCAGCTTCAGAAGCTGAAGAAATCTCTGGAAGAAATGAAAGAAGAAGTTGAAGAGAGTGCGAAACAATTGGAGGCGTCTTCATGCTTGATGCTTCTTGCTCAGAAAGCTGTGACCAGTAAAGACAAAGAGAATCTTAATGCTTCTGCAAAACATATTTGA 594 0.4933 MGRRKIEMKLVRDSGSRQVTFSKRRNGVFKKANELATLCGAEIAVVAFSPGGKPFSYGQPSVDTVANRFLRRGSAISNPNNNNGGGSKGLRANGGDVIEKLNQKLMNLVNESQAEKKKGEMLDERLKKMNLTRQGKLPLEGLNRDQLQKLKKSLEEMKEEVEESAKQLEASSCLMLLAQKAVTSKDKENLNASAKHI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4533g00024 197 Coils Coil 143 174 - -
Pral4533g00024 197 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Pral4533g00024 197 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Pral4533g00024 197 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral4533g00024 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4533g00024 197 Coils Coil 98 118 - -
Pral4533g00024 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pral4533g00024 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4533g00024 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4533g00024 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4533g00024 197 PANTHER MADS BOX PROTEIN 3 163 - -
Pral4533g00024 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4533g00024 197 MobiDBLite consensus disorder prediction 74 94 - -
Pral4533g00024 197 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4533g00024 Pral-Chr4533 138405 138998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4533g00024 1 180 Type I MADS-box Gene Family AT2G34440 45.556 1.10e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4533g00024 SRF-TF 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4533g00024 - - pcin:129286044 253.447