Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4533g00013 ATGAACCATAACACCCAGCCCAACGCGGGGCTTTTCACACTCGAAGGAGAAAAGCGAGTTCTAGATTCTGAGCTTTGGCATGCTTGTGCTGGCCCTCTTGTTTCCTTGCCGGCTGTTGGAAGCCGCGTCGTGTACTTTCCCCAGGGTCACAGTGAACAGGTTGCTGCATCGACTAACAAGGAGGTGGACGTCCATTTTCCCAACTACCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATGTGACTATGCATGCTGACGTAGAGACGGATGAAGTATACGCCCAGATGACCTTGCAACCTCTGAATCCTCAAGAACAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTTCCAGTAAACAGCCAACGAACTACTTCTGCAAAACTTTGACTGCTAGTGACACGAGCACTCATGGGGGATTCTCTGTTCCTCGTAGGGCTGCTGAGAAAGTGTTTCCTCCATTGGATTTCTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCACGGGACTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCTAAACGACATCTACTTACAACAGGATGGAGTGTCTTTGTAAGTGCTAAGAGGCTTATTGCTGGTGATTCTGTGCTGTTTATTTGGAATGATAAGAATCAATTGCTTCTTGGTATTCGACGTGCCAATCGACCACAAACAGTGATGCCATCATCAGTGCTCTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACACGCAGCTGCAACCAACAGTCGTTTCACCATATTCTACAACCCCCGTGCTAGCCCATCAGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTGTATCATACCCGAGTTTCAGTTGGCATGCGCTTCCGGATGTTGTTTGAAACGGAGGAATCAAGTGTCCGGCGATACATGGGCACAATCACTGGTATTAGCGACCTGGATCCTGTGAGGTGGCCGAATTCACATTGGCGATCAGTTAAGGTTGGCTGGGATGAGTCCACAGCAGGAGATAGGCAACCTAGAGTCTCCTTGTGGGAAATCGAGCCATTAACAACATTTCCAATGTATCCTTCCCCATTCCCTCTTAGGCTTAAACGACCATGGCCTACTGGACTGCCTTCTTTCCATGGTATGAAGGATGATGATTTGGGTATGAATACTCCACTGTTTTTGGATAGAGGGCTTCAGTCTCTTAATTTTCCTGGAATTGGGGTTACTCCTTGGATGCAACCAAGGTTTGATCCCTCCTTTCTGAATTTGCAATCTGACATGTACCAAGCCATGACTGCTGCTGCACTTCAAGATATAAGGACTGTAGATCCTTCCAAACAGCATGCAACATCCCTGTTTCAATTTCAGCAACCACAGAACTTCCCCAACAGGACTGCTGCTTTAGTGCAGGCTCAGATGATGCAGCAGTCTCAACCTCAGCAAGCTCTTCAAAACAATCAAGAGAATATGCAACCATCTGAATCTCAGGCTCTAAGTCAGACTCATCTTCAGCATCAAAACTCTTTCATTAATCATCATCATCAGCAGCAGCAGCAGCACCACCACCACCAGCAGCCACAACAGCAACATCAACAGCAAAGTTTTTCTGATCACTCCAATACTGTCTCTACAATGTCTCAATTTGTTTCAGCACCTCAACCTCAGTCGCCACCGGCTCAAGCTATTCCTTCATTGTGCCATCAGCAAAGTTTTTCTGATTCAAATGGGAACAATGTAACTGCTGCTATGGTTTCTCCCCTCCATAGTATTTTGAGTTCTTTTCCCCAGGAAGAAACTTCCCACCTTCTCAATATTCCTAGGACTAGTTCTTGGATTCCTGTTCAACCTTCTACTGCTACTGCTACTTGGCCTTCCAAGCGTGTTGCTGTGGACCCTCTTCTTTCTTCCGGAGCTTCTCAATGTGATCTGCCTCACATGGATCAGATAGGGCAGCGCCAGAATACACTGTCTCAAAGTGTGGTTACCTTGCCACCCTTTCCTGGAAGGGATTGCTCGATTGACCAAGAAGGGAGTACTGATCCACAAAACCATCTTTTATTTGGTGTTAATATAGAGCCCTCATCTCTTTTAGTGCACAATGGGATGTCAAGCCTTAAGGGGGCTCGCAGCAACATTGATTCCACAACCATACCATTTCAGTCTTCTAATTATCTGAATACTGCAAACCCTGAATCTGCGTTGAATCCTGCAATGTCACAAACCATTTGTGAATCAGGATTCTTGCAGGCCTCAGAAAATATGGGCCAAGGAAATTCTCCAAAAACCTTTGTAAAGGTTTACAAGGCAGGGTCCTTTGGAAGGTCGCTGGATATCACTAAATTCAGCGGCTACCATGAGCTGCGTCGCGAGCTTGCTCGCATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGACAGAGAGAATGATGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAGTTTGTCAACAGTGTATGGTGTATCAAGATACTTTCCCCACAAGAAGTGCAACAAACGGACAATAATCGTCTTGAGCTTTTGAATTCAGTTCCGATTCAAAGACTTTCCAATGGAACATGTGAAGACTTTGTGAGCCGACAGGACCCAAGAAGTTTAAGCTCTGGGATCACAACCGTGGGGTCTCTAGACTACTAA 2706 0.4645 MNHNTQPNAGLFTLEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDVHFPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLNPQEQKEAYLPAELGTSSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGMKDDDLGMNTPLFLDRGLQSLNFPGIGVTPWMQPRFDPSFLNLQSDMYQAMTAAALQDIRTVDPSKQHATSLFQFQQPQNFPNRTAALVQAQMMQQSQPQQALQNNQENMQPSESQALSQTHLQHQNSFINHHHQQQQQHHHHQQPQQQHQQQSFSDHSNTVSTMSQFVSAPQPQSPPAQAIPSLCHQQSFSDSNGNNVTAAMVSPLHSILSSFPQEETSHLLNIPRTSSWIPVQPSTATATWPSKRVAVDPLLSSGASQCDLPHMDQIGQRQNTLSQSVVTLPPFPGRDCSIDQEGSTDPQNHLLFGVNIEPSSLLVHNGMSSLKGARSNIDSTTIPFQSSNYLNTANPESALNPAMSQTICESGFLQASENMGQGNSPKTFVKVYKAGSFGRSLDITKFSGYHELRRELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQTDNNRLELLNSVPIQRLSNGTCEDFVSRQDPRSLSSGITTVGSLDY 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4533g00013 901 MobiDBLite consensus disorder prediction 528 569 - -
Pral4533g00013 901 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4533g00013 901 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Pral4533g00013 901 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Pral4533g00013 901 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 857 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4533g00013 901 FunFam Auxin response factor 126 230 - -
Pral4533g00013 901 FunFam Auxin response factor 292 364 - -
Pral4533g00013 901 MobiDBLite consensus disorder prediction 477 521 - -
Pral4533g00013 901 Gene3D - 126 229 IPR015300 -
Pral4533g00013 901 SMART B3_2 128 230 IPR003340 GO:0003677
Pral4533g00013 901 SUPERFAMILY CAD & PB1 domains 764 843 - -
Pral4533g00013 901 CDD B3_DNA 127 228 IPR003340 GO:0003677
Pral4533g00013 901 Pfam AUX/IAA family 759 852 IPR033389 -
Pral4533g00013 901 FunFam Auxin response factor 763 857 - -
Pral4533g00013 901 MobiDBLite consensus disorder prediction 477 569 - -
Pral4533g00013 901 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Pral4533g00013 901 Gene3D - 292 364 - -
Pral4533g00013 901 ProSiteProfiles PB1 domain profile. 768 852 IPR000270 GO:0005515
Pral4533g00013 901 Gene3D - 764 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4533g00013 Pral-Chr4533 67456 74099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4533g00013 14 480 B3 DNA Binding Superfamily AT1G30330 86.809 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4533g00013 AUX_IAA 7.3e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4533g00013 - - gmx:100798719 1411.36