Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral452g00004 ATGACAGGCCATTGCTATGACAAAAATGGAGTGAAGAGAGGTGCGTGGAGTAAGGAGGAGGATGAAAGGTTAAGAGCGTATGTTGAGAGATATGGCCACGGCAATTGGCGTCAGCTCCCCAAACGCGCAGGTTTATCAAGGTGTGGAAAGAGTTGCCGACTTCGCTGGCTAAATTACCTTCGTCCGGGCGTAAAGCATGGAAATTATACCCAGGAAGAAGACGAACTCATCATCAAATTGCATGAACAGCATGGAAATAAATGGTCTTTGATTGCCAAAAGATTACCAGGGAGAAGTGACAACGAGGTTAAGAACCATTGGCATAGCCACCTAAAGAAGCACTTTGGGTGCAATCATGAGGAAAAATCTGAGTTCAAAACGAAGGCTACTGGTACTTGTGAAGGAAAAATGACGAAGTATTTCGAACCTGAAAACCCTGGGCTTGGTTTTTCTGCTGCTTCCTCCAGTGATGTCTCAGAAAGCTCACCACCCATTTACAATTCATCTTCAGCCTTTTCCTTCGAAGCATCAGGCGCTGCTAATGTTGCATGGGAAATATTTGACGAATTCGGAGATTTTTGGACCCAACCATTTGTCCCAGAGAATATATGTGACCAGGATAATTGTTACAGCCTGTGCTATGCTGCACATGAAGCTGACGTGGATGGTTATTCCTCATACCTTCTCCAAAATGCTGAGTTTTTGTGCCAAATGATGCAAGAATTTCCTGAAGATCCTAAAAAGGATATATAG 753 0.4382 MTGHCYDKNGVKRGAWSKEEDERLRAYVERYGHGNWRQLPKRAGLSRCGKSCRLRWLNYLRPGVKHGNYTQEEDELIIKLHEQHGNKWSLIAKRLPGRSDNEVKNHWHSHLKKHFGCNHEEKSEFKTKATGTCEGKMTKYFEPENPGLGFSAASSSDVSESSPPIYNSSSAFSFEASGAANVAWEIFDEFGDFWTQPFVPENICDQDNCYSLCYAAHEADVDGYSSYLLQNAEFLCQMMQEFPEDPKKDI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral452g00004 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pral452g00004 250 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pral452g00004 250 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral452g00004 250 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 154 - -
Pral452g00004 250 CDD SANT 68 111 IPR001005 -
Pral452g00004 250 Gene3D - 13 65 - -
Pral452g00004 250 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pral452g00004 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pral452g00004 250 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pral452g00004 250 CDD SANT 15 60 IPR001005 -
Pral452g00004 250 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pral452g00004 250 FunFam Transcription factor RAX3 5 66 - -
Pral452g00004 250 Gene3D - 68 137 - -
Pral452g00004 250 SMART sant 65 113 IPR001005 -
Pral452g00004 250 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral452g00004 Pral-Chr452 38643 39984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral452g00004 5 115 MYB Transcription Factor Family AT4G38620 65.766 1.57e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral452g00004 Myb_DNA-binding 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral452g00004 K09422 - pop:7458852 223.016