Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4527g00002 ATGGCTGCTTCTTCGTGCAGTAACAGTGGTGGCAATGCCTACGACGTCCCTTGGGTTGAGAAGTATCGACCCGCCAAGGTCGCCGACATCGTCGGCAATGAAGATGCAGTCTCCAGGCTCCAGGTTATTGCTCGCGACGGCAATATGCCCAATTTGATATTAGCGGGTCCTCCTGGAACTGGAAAAACAACTAGTGTTCTAGCGCTTGCACATGAACTTCTGGGGCAAAATTTCAAAGAAGCTGTTCTTGAGCTAAATGCGTCAGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTTGCACAAAAGAAAGTGACACTGCCTCCTGGGCGACACAAAATAGTAATACTGGATGAAGCTGACAGCATGACATCAGGAGCTCAGCAAGCTCTGAGAAGGACTATGGAAATATATTCAAATTCCACTCGTTTTGCTGTTGCATGCAATACGTCATCTAAAATTATTGAACCAATTCAGAGTAGATGTGCTATTGTGCGCTTTTCTCGATTATCTGATCAAGAAATACTTGGTCGTCTCATGGTAGTGGTTGAAGCTGAAAAGGTGCCCTATGTTCCTGAAGGCATTGAAGCCATTATTTTCACAGCCGATGGTGACATGAGGCAGGCGTTGAATAACTTGCAGGCAACACACAGTGGGTTCCGATTTGTTAACCAAGAAAATGTATTCAAGGTTTGTGATCAGCCGCATCCATTGCATGTGAAGAATATGGTGCATAATGTGATTGAAGGAAACTTTGATGAGGCTTGCATGGGCCTCAAACAACTTTACGATTTGGGATACTCGCCCACTGATATAATCACAACACTTTTTCGTATAATAAAGAATTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCACATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGCTCTGTGGTCTGTTGGCTAAGTTTTCTCTGGTTCGTGAAACAGCTAAAGCTGTTTGA 1005 0.4348 MAASSCSNSGGNAYDVPWVEKYRPAKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSVLALAHELLGQNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFAVACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKVPYVPEGIEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVHNVIEGNFDEACMGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKFSLVRETAKAV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4527g00002 334 Gene3D - 174 237 - -
Pral4527g00002 334 FunFam replication factor C subunit 2 238 330 - -
Pral4527g00002 334 SMART AAA_5 48 174 IPR003593 GO:0016887
Pral4527g00002 334 Pfam Replication factor C C-terminal domain 238 323 IPR013748 -
Pral4527g00002 334 Pfam ATPase family associated with various cellular activities (AAA) 52 170 IPR003959 GO:0005524|GO:0016887
Pral4527g00002 334 CDD AAA 31 168 - -
Pral4527g00002 334 Gene3D - 11 173 IPR027417 -
Pral4527g00002 334 FunFam Replication factor C subunit 4 10 173 - -
Pral4527g00002 334 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 17 318 - -
Pral4527g00002 334 SUPERFAMILY post-AAA+ oligomerization domain-like 237 328 IPR008921 GO:0003677|GO:0006260
Pral4527g00002 334 CDD HLD_clamp_RFC 173 235 - -
Pral4527g00002 334 FunFam Replication factor C subunit 4 174 237 - -
Pral4527g00002 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 236 IPR027417 -
Pral4527g00002 334 Gene3D - 238 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4527g00002 Pral-Chr4527 33687 37124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4527g00002 11 333 Core DNA Replication Machinery Family AT1G63160 90.712 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4527g00002 K10755 - jre:108984440 617.076