Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4526g00002 ATGGTTCTCTCCAACAAGAAGTTTAAACAGAAGCTTAGAGCGGAGTTAGCTCATTCTCAGTCCGCAAATCCCGATTGTTGTTTAAAAAATCTTCTTGATTCTACGACCCAGAAAATCCGATTTTCAAAGAGAGAGAAGCGCAGAAAGATTCGTTCTTTGCGACAATCCGAGGCTGCCCAAGAAGGTGGCGATGGTCATACCGTTGATAAAAGCAAAGAAGACGAGGGTACACAGAGGAAGAGCAAAAAGAGGAAGAGGAAGGCTGAGGACAACGGTGTGGCAATTGGGGCTGTAAAGGATGCGAAGAATTCGAAGAAGAGACGTGATAAGAAGAAGAAGAAGAACACGAAAAAGGCCAAGAAGCACAAGGATAAAGATCCTAATCCTGGAGATGAGCCTCCAGAAGCTTCAGAGTTAACCAAGAGTAATGGCAGTGGACAAATTGCTGATGTCCCTACAAAAGTGTATGTTGGAGGAATTCCCTACTATTCAACCGACGATGATATTCGAAGCTATTTCCAGGGCTGTGGCACAATAACTGAAATTGATTGCATGACGTTTCCCGAGACTGGCAAGTTTAGAGGGATTGCCCTTATTAGTTTTAAGACTGAAGCTGCTGCTAAACGAGCCTTGGCTCTTGATGGATCTGACATGGGAGGACTGTTTCTTAAAATTCAACCATATAAAGCAACTCGAACCGTTAAAGGGTCTGATTTCACCCCAAAACCTGTGGAGGGCTACAACAGAATCTATGTTGGAAATTTGTCATGGGACATAACGGAGGATCAATTAAGGACTTTATTCTCCAACTGCAGCATATCATCCATACGTTTCGGCATGGATAAGGAGACAGGAGAATTCCGAGGGTATGCCCATGTGGATCTCACCGACAGTCAATCGGTGAAAACAGCACTTTCCTTGGACCAAAAGGTGATGTGTGGAAGACCTGTTAGGATAACTTGTGCAGTTCCTTTGAAGAAGCCATGGAAACAAACAAGCGATGTGCCTCCGAACACCCAAGTTGATAGGGAGAAGTCAAGCTCCAGTGGAAGTGGTAAAATGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGACATATTTCTTCTGCATGCCCAAAGAAACAGAATGTTGATTCAAGTACAAGCTAG 1152 0.441 MVLSNKKFKQKLRAELAHSQSANPDCCLKNLLDSTTQKIRFSKREKRRKIRSLRQSEAAQEGGDGHTVDKSKEDEGTQRKSKKRKRKAEDNGVAIGAVKDAKNSKKRRDKKKKKNTKKAKKHKDKDPNPGDEPPEASELTKSNGSGQIADVPTKVYVGGIPYYSTDDDIRSYFQGCGTITEIDCMTFPETGKFRGIALISFKTEAAAKRALALDGSDMGGLFLKIQPYKATRTVKGSDFTPKPVEGYNRIYVGNLSWDITEDQLRTLFSNCSISSIRFGMDKETGEFRGYAHVDLTDSQSVKTALSLDQKVMCGRPVRITCAVPLKKPWKQTSDVPPNTQVDREKSSSSGSGKMKRRTCFECGEKGHISSACPKKQNVDSSTS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4526g00002 383 CDD RRM1_PHIP1 155 226 IPR034361 -
Pral4526g00002 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 324 IPR000504 GO:0003723
Pral4526g00002 383 SMART rrm1_1 154 226 IPR000504 GO:0003723
Pral4526g00002 383 SMART rrm1_1 249 320 IPR000504 GO:0003723
Pral4526g00002 383 SUPERFAMILY RNA-binding domain, RBD 241 337 IPR035979 GO:0003676
Pral4526g00002 383 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 64 236 - -
Pral4526g00002 383 MobiDBLite consensus disorder prediction 1 148 - -
Pral4526g00002 383 Gene3D - 337 383 - -
Pral4526g00002 383 Pfam Zinc knuckle 357 374 IPR001878 GO:0003676|GO:0008270
Pral4526g00002 383 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
Pral4526g00002 383 MobiDBLite consensus disorder prediction 330 355 - -
Pral4526g00002 383 MobiDBLite consensus disorder prediction 63 80 - -
Pral4526g00002 383 MobiDBLite consensus disorder prediction 23 37 - -
Pral4526g00002 383 MobiDBLite consensus disorder prediction 104 121 - -
Pral4526g00002 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 317 IPR000504 GO:0003723
Pral4526g00002 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 221 IPR000504 GO:0003723
Pral4526g00002 383 SUPERFAMILY Retrovirus zinc finger-like domains 346 378 IPR036875 GO:0003676|GO:0008270
Pral4526g00002 383 Gene3D - 95 227 IPR012677 -
Pral4526g00002 383 ProSiteProfiles Zinc finger CCHC-type profile. 359 374 IPR001878 GO:0003676|GO:0008270
Pral4526g00002 383 Gene3D - 234 330 IPR012677 -
Pral4526g00002 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 230 IPR000504 GO:0003723
Pral4526g00002 383 MobiDBLite consensus disorder prediction 332 347 - -
Pral4526g00002 383 SUPERFAMILY RNA-binding domain, RBD 152 230 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4526g00002 Pral-Chr4526 41778 47951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4526g00002 153 322 Eukaryotic Initiation Factors Gene Family AT3G16380 29.834 7.07e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4526g00002 - - gmx:100814693 433.335