Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4521g00021 ATGGAAGTAAAGACAAATCAACAAGCTAAGTATATACTACTCCTGCGTGCATGGATAAAGCTGGGCGTCCGGTACCAGGGAGTGAAGGTGGCCATGGGGCAAGTTTGCGAGTCGCGATGGAGATTCAGGGGTAGACAATCCAAGGGCAGAGTGTGGTTGGGTACTTTTGACGCAGTGGAGGAAACAGCCAGGGCTTATGACGAGGCCCAAGCTGCTTGCTGCATGAGAGGCTCATTCGCATTTCTCAGCTTCCCAAATGAATATCACCCTGGTTCTAACATTGCAACGTCATCTTCTTCAGCTCCTTTGAGGAGCCGCCATGAAGTGCTCAAGTACTTGGATGATAAACTCTTGGAGGAGCTTCTGGACTGA 372 0.5 MEVKTNQQAKYILLLRAWIKLGVRYQGVKVAMGQVCESRWRFRGRQSKGRVWLGTFDAVEETARAYDEAQAACCMRGSFAFLSFPNEYHPGSNIATSSSSAPLRSRHEVLKYLDDKLLEELLD 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4521g00021 123 PANTHER DNA-BINDING DOMAIN 48 96 IPR044808 GO:0003700|GO:0009873
Pral4521g00021 123 Gene3D AP2/ERF domain 23 86 IPR036955 GO:0003700|GO:0006355
Pral4521g00021 123 SMART rav1_2 24 91 IPR001471 GO:0003700|GO:0006355
Pral4521g00021 123 Pfam AP2 domain 35 69 IPR001471 GO:0003700|GO:0006355
Pral4521g00021 123 SUPERFAMILY DNA-binding domain 38 86 IPR016177 GO:0003677
Pral4521g00021 123 ProSiteProfiles AP2/ERF domain profile. 24 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4521g00021 Pral-Chr4521 394758 395129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4521g00021 49 123 AP2-EREBP Transcription Factor Family AT3G23230 41.935 1.38e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4521g00021 AP2 2.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4521g00021 - - pcin:129299756 69.3218