Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4521g00019 ATGGCAGGAGCTGAATCAAACAGGCCCATCACAAAGATCAGAAGGTTCATAGGGGTCAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCATCTCAACACGTGAGGCTATGGCTGGGGACCTATGACACCCCGGAGGAAGCGGCTCGGGCTTATGATGAAGCGGCTCGGACCCTGCGTGGCGAAAACGCCCGAACCAACTTCGCACTGCCAGCTAGCCAATCAGCCACGGGTGATCAATCTGGGTCCGAGGCCAAGCATGGGATAAATTTTTCTTCTTTGAAAGCTAAGCTGAGCAAGAATCTTCAGAGTATAATGACCAGATCAGGAAGCGAAACGACGTCGTTCAAAAGTAGAGTGAGTGACCATATCACTTTTGCTAGCATATTTCATCACAAGAGGAGTTTCCTGCCGTACCAAATCTCTTCACTTGGTACAATGAAGAACATGGATTGTATGGTTCAGCCTAGTATTATAGTACCTCCTGCTAAAACTGATAACGATCAGCCTTGCGGTTCTTGGGAAAATTCCTGTGCCTCTGATTGTGGCTGCTCCAATCATGGGGTTGGGCTCCGGCAAACTGCAACGGACTCTGCAGTGTCGGACGGGTCGGATTCTGGGGAGGTTATTAGTACTTTGGGGGATCAAGGGTTTATGGAGCAAGTGATGGGGTGGATCAATAGCAGCCCTGAGGAAGGTTCAAGGAGTAAGAGGCTTAAGGTGTCATCTTCAGTATTTGTGCCTCCAACTTTTAGTGGGTCTCCAAGTTGTGTTAGTGGTAGTTGTGGCTCTCCTTGTTATGGTTATGGTTCTCCATATGTATGA 834 0.4892 MAGAESNRPITKIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARTLRGENARTNFALPASQSATGDQSGSEAKHGINFSSLKAKLSKNLQSIMTRSGSETTSFKSRVSDHITFASIFHHKRSFLPYQISSLGTMKNMDCMVQPSIIVPPAKTDNDQPCGSWENSCASDCGCSNHGVGLRQTATDSAVSDGSDSGEVISTLGDQGFMEQVMGWINSSPEEGSRSKRLKVSSSVFVPPTFSGSPSCVSGSCGSPCYGYGSPYV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4521g00019 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 120 - -
Pral4521g00019 277 SUPERFAMILY DNA-binding domain 16 72 IPR016177 GO:0003677
Pral4521g00019 277 CDD AP2 15 72 IPR001471 GO:0003700|GO:0006355
Pral4521g00019 277 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Pral4521g00019 277 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Pral4521g00019 277 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Pral4521g00019 277 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Pral4521g00019 277 FunFam ethylene-responsive transcription factor RAP2-11 4 73 - -
Pral4521g00019 277 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Pral4521g00019 277 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4521g00019 Pral-Chr4521 313702 314535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4521g00019 15 72 AP2-EREBP Transcription Factor Family AT5G19790 74.138 5.19e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral4521g00019 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4521g00019 K09286 - qsa:O6P43_017554 255.758