Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4521g00017 | ATGGAGAAAGAATTGATCCGATTATATGAAGCAGTGAAGAAGGCGGCCGATGCGGCCACGACCTCAACCGCCGGCGAGGTCGAAGAAAATCGATGCCTTGATGCGTTCAAGCTCCTCAAGAAGTTTCCCGTCAATTATCAAATTTTGGCATCGACACAGGTGGGAAAACATCTAAGAGTTCTTACAAAGCATCCCAAAAAGAAGATCCGGGCTTTCGCTGTGGACTTGTTAGATATATGGAAAGCTAAAATCACGAAGGAAATCAGCAAAAGCAAGGAGGAAAAAGTTTATCAGAAGGTTTCAGAGGCTGAGAACACTAAACGGAATAGGACCTCAAGTTCCCAAAACGGAAAGACTAAGGCTGAGAAAACTGATAGGAATATTGAGACATCAACCTCAGAAAATATAAAGGAAAAAGATTGCAATGTAGTTACAGGTGAGAAAACCGTTTCTGTTGCAAACATGGCCAAGGATGAGAAGAAGCAAGTTTCTGGAATACTAAATGAGGCACCCTCAAGCCTTGCTGCTCCTTCAAAGAAGGAAACTATGATTAAAACTAACGATGAAAGGCGAGACAAAATAAGGGAAATTCTTCATGAGGCATTCTCTAGAGTTTCAGGGGAGGCTGATGAAGCAATCAAGGATCAAGTTAAAACTTGTGACCCTGTTAGAGTTTCTGTTGCAGTGGAGTCTGTGCTATTTCAGAACTGGGGCCATTTTAATGGGGCTCAGAAGATCAAGTACAGGTCCTTGATGTTTAACCTGAAGGATCCGAAAAACCCAGATTTCCGAAGAAGAGTTCTGCTCGGAGAGTACTCGCCGGAGCGGCTCGTGGACATGAAAACAGCAGAAATGGCCAGTGACAAGAGGAAGAAGGAGAACGAGACGATCAAAAGGAAAGCTTTGTTTGATTGTGAGCGTGGACAGAAACCAAAAGCCACAACTGATCAGTTCAAGTGTGGGAAATGTGGGAAGAGAGAGAGCATCTTTCATCAGATGCAGACTCGGAGTGCTGATGAACCTATGACTACATATGTTACCTGCGTTTCATGCAATCACCATTGGAAGTTCTGTTAG | 1077 | 0.4364 | MEKELIRLYEAVKKAADAATTSTAGEVEENRCLDAFKLLKKFPVNYQILASTQVGKHLRVLTKHPKKKIRAFAVDLLDIWKAKITKEISKSKEEKVYQKVSEAENTKRNRTSSSQNGKTKAEKTDRNIETSTSENIKEKDCNVVTGEKTVSVANMAKDEKKQVSGILNEAPSSLAAPSKKETMIKTNDERRDKIREILHEAFSRVSGEADEAIKDQVKTCDPVRVSVAVESVLFQNWGHFNGAQKIKYRSLMFNLKDPKNPDFRRRVLLGEYSPERLVDMKTAEMASDKRKKENETIKRKALFDCERGQKPKATTDQFKCGKCGKRESIFHQMQTRSADEPMTTYVTCVSCNHHWKFC | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4521g00017 | 358 | SMART | TFS2_5 | 8 | 86 | IPR003617 | GO:0005634 | |
| Pral4521g00017 | 358 | PIRSF | TFIIS | 1 | 358 | IPR035100 | - | |
| Pral4521g00017 | 358 | NCBIfam | transcription elongation factor S-II | 23 | 358 | IPR006289 | GO:0003676|GO:0005634|GO:0006368 | |
| Pral4521g00017 | 358 | SMART | mid_6 | 192 | 296 | IPR003618 | GO:0006351 | |
| Pral4521g00017 | 358 | Pfam | TFIIS helical bundle-like domain | 37 | 83 | IPR017923 | - | |
| Pral4521g00017 | 358 | SUPERFAMILY | Elongation factor TFIIS domain 2 | 182 | 288 | IPR036575 | GO:0006351 | |
| Pral4521g00017 | 358 | MobiDBLite | consensus disorder prediction | 95 | 134 | - | - | |
| Pral4521g00017 | 358 | Gene3D | - | 287 | 358 | - | - | |
| Pral4521g00017 | 358 | PANTHER | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN | 21 | 358 | - | - | |
| Pral4521g00017 | 358 | MobiDBLite | consensus disorder prediction | 119 | 134 | - | - | |
| Pral4521g00017 | 358 | Pfam | Transcription factor S-II (TFIIS), central domain | 186 | 304 | IPR003618 | GO:0006351 | |
| Pral4521g00017 | 358 | SUPERFAMILY | Zinc beta-ribbon | 297 | 356 | - | - | |
| Pral4521g00017 | 358 | ProSiteProfiles | TFIIS central domain profile. | 190 | 313 | IPR003618 | GO:0006351 | |
| Pral4521g00017 | 358 | ProSitePatterns | Zinc finger TFIIS-type signature. | 320 | 355 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Pral4521g00017 | 358 | ProSiteProfiles | Zinc finger TFIIS-type profile. | 316 | 356 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Pral4521g00017 | 358 | Pfam | Transcription factor S-II (TFIIS) | 318 | 356 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Pral4521g00017 | 358 | CDD | Zn-ribbon_TFIIS | 311 | 357 | - | - | |
| Pral4521g00017 | 358 | CDD | TFIIS_I | 28 | 82 | - | - | |
| Pral4521g00017 | 358 | SMART | Cys4_2 | 318 | 357 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Pral4521g00017 | 358 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 1 | 100 | IPR035441 | - | |
| Pral4521g00017 | 358 | Gene3D | - | 172 | 286 | IPR036575 | GO:0006351 | |
| Pral4521g00017 | 358 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 3 | 93 | IPR035441 | - | |
| Pral4521g00017 | 358 | ProSiteProfiles | TFIIS N-terminal domain profile. | 10 | 87 | IPR017923 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4521g00017 | Pral-Chr4521 | 292391 | 293581 | Dispersed/Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | IWS1 | Pral4521g00017 | TFIIS_M | 1.5e-30 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4521g00017 | K03145 | - | qsa:O6P43_014856 | 407.912 |