Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4521g00013 | ATGATGGAGAAAGAATTGATCCGATTATATGAAGCAGTGAAGAAGGCGGCCGATGCGGCCACGACCTCAACCGCCGGCGAGGTCGAAGAAAATCGATGCCTTGATGCGTTCAAGCTCCTCAAGAAGTTTCCCGTCAATTATCAAATTTTGGCATCGACACAGGTGGGAAAACATCTAAGAGTTCTTACAAAGCATCCCAAAAAGAAGATCCGGGCTTTCGCTGTGGACTTGTTAGATATATGGAAAGCTAAAATCACGAAGGAAATCAGCAAAAGCAAGGAGGAAAAAGTTTATCAGAAGGTTTCAGAGGCTGAGAACACTAAACGGAATAGGACCTCAAGTTCCCAAAACGGAAAGACTAAGGCTGAGAAAACTGATAGGAATATTGAGACATCAACCTCAGAAAATATAAAGGAAAAAGATTGCAATGTAGTTACAGGTGAGAAAACCGTTTCTGTTGCAAACATGGCCAAGGATGAGAAGAAGCAAGTTTCTGGAATACTAAATGAGGCACCCTCAAGCCTTGCTGCTCCTTCAAAGAAGGAAACTATGATTAAAACTAACGATGAAAGGCGAGACAAAATAAGGGAAATTCTTCATGAGGCATTCTCTAGAGTTTCAGGGGAGGCTGATGAAGCAATCAAGGATCAAGTTAAAACTTGTGACCCTGTTAGAGTTTCTGTTGCAGTGGAGTCTGTGCTATTTCAGAACTGGGGCCATTTTAATGGGGCTCAGAAGATCAAGTACAGGTCCTTGATGTTTAACCTGAAGGATCCGAAAAACCCAGATTTCCGAAGAAGAGTTCTGCTCGGAGAGTACTCGCCGGAGCGGCTCGTGGACATGAAAACAGCAGAAATGGCCAGTGACAAGAGGAAGAAGGAGAACGAGACGATCAAAAGGAAAGCTTTGTTTGATTGTGAGCGTGGACAGAAACCAAAAGCCACAACCGATCAGTTCAAGTGTGGGAAATGTGGGAAGAGAGAGAGCATCTTTCATCAGATGCAGACTCGGAGTGCTGATGAACCTATGACTACATATGTTACCTGCGTTTCATGCAATCACCATTGGAAGTTCTGTTAG | 1080 | 0.437 | MMEKELIRLYEAVKKAADAATTSTAGEVEENRCLDAFKLLKKFPVNYQILASTQVGKHLRVLTKHPKKKIRAFAVDLLDIWKAKITKEISKSKEEKVYQKVSEAENTKRNRTSSSQNGKTKAEKTDRNIETSTSENIKEKDCNVVTGEKTVSVANMAKDEKKQVSGILNEAPSSLAAPSKKETMIKTNDERRDKIREILHEAFSRVSGEADEAIKDQVKTCDPVRVSVAVESVLFQNWGHFNGAQKIKYRSLMFNLKDPKNPDFRRRVLLGEYSPERLVDMKTAEMASDKRKKENETIKRKALFDCERGQKPKATTDQFKCGKCGKRESIFHQMQTRSADEPMTTYVTCVSCNHHWKFC | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4521g00013 | 359 | SMART | TFS2_5 | 9 | 87 | IPR003617 | GO:0005634 | |
| Pral4521g00013 | 359 | MobiDBLite | consensus disorder prediction | 120 | 135 | - | - | |
| Pral4521g00013 | 359 | ProSiteProfiles | TFIIS N-terminal domain profile. | 11 | 88 | IPR017923 | - | |
| Pral4521g00013 | 359 | PANTHER | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN | 22 | 359 | - | - | |
| Pral4521g00013 | 359 | PIRSF | TFIIS | 1 | 359 | IPR035100 | - | |
| Pral4521g00013 | 359 | ProSiteProfiles | Zinc finger TFIIS-type profile. | 317 | 357 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Pral4521g00013 | 359 | SUPERFAMILY | Elongation factor TFIIS domain 2 | 183 | 289 | IPR036575 | GO:0006351 | |
| Pral4521g00013 | 359 | SMART | Cys4_2 | 319 | 358 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Pral4521g00013 | 359 | Gene3D | - | 288 | 359 | - | - | |
| Pral4521g00013 | 359 | SUPERFAMILY | Zinc beta-ribbon | 298 | 357 | - | - | |
| Pral4521g00013 | 359 | Pfam | Transcription factor S-II (TFIIS), central domain | 187 | 305 | IPR003618 | GO:0006351 | |
| Pral4521g00013 | 359 | ProSiteProfiles | TFIIS central domain profile. | 191 | 314 | IPR003618 | GO:0006351 | |
| Pral4521g00013 | 359 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 1 | 94 | IPR035441 | - | |
| Pral4521g00013 | 359 | MobiDBLite | consensus disorder prediction | 96 | 135 | - | - | |
| Pral4521g00013 | 359 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 1 | 101 | IPR035441 | - | |
| Pral4521g00013 | 359 | Gene3D | - | 173 | 287 | IPR036575 | GO:0006351 | |
| Pral4521g00013 | 359 | SMART | mid_6 | 193 | 297 | IPR003618 | GO:0006351 | |
| Pral4521g00013 | 359 | Pfam | Transcription factor S-II (TFIIS) | 319 | 357 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Pral4521g00013 | 359 | ProSitePatterns | Zinc finger TFIIS-type signature. | 321 | 356 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Pral4521g00013 | 359 | NCBIfam | transcription elongation factor S-II | 24 | 359 | IPR006289 | GO:0003676|GO:0005634|GO:0006368 | |
| Pral4521g00013 | 359 | CDD | Zn-ribbon_TFIIS | 312 | 358 | - | - | |
| Pral4521g00013 | 359 | CDD | TFIIS_I | 29 | 83 | - | - | |
| Pral4521g00013 | 359 | Pfam | TFIIS helical bundle-like domain | 38 | 84 | IPR017923 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4521g00013 | Pral-Chr4521 | 282313 | 283506 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | IWS1 | Pral4521g00013 | TFIIS_M | 1.5e-30 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4521g00013 | K03145 | - | qsa:O6P43_014856 | 407.912 |