Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4517g00019 ATGAGTTTTGGGGGTTTTCTCGACAATAACTGGGGTGGTGGTGGTGCTGGCGGCGGCGGAGGAGGGGGCGGCGGCGGTGCCGGAATCGTCGCCGATATTCCTTACAGCAACGGCACCAACGATAATAGAATGCCGTCGAGTGGTTCAATCTCACAGCCTCGTCTCGTCACACCGCCAACAATGGCCAAATCCATGTTCAACTCTCCTGGGCTTTCTCTAGCACTGCAAACGAGTCTTGACGAGCAACAAGGGGATGCGAATAGAATGCCTGAGAGCTACGAGCCAAATGTTGGGGCAAGAAGAAGCCGAGAAGAAGAACACGATAGCAGATCTGGCAGTGATAATATGGAAGGCCCCACTTCCGGCGACGATCAGGACGCCGCCGACAACCGTCCGAGGAAAAAACGTTATCACCGACATACCCCTCAGCAAATACAAGAGCTCGAAGCTTTATTCAAGGAGTGTCCACACCCAGATGAGAAGCAAAGACTAGAACTGAGCAGAAGGCTTTGCTTGGAAACCAGACAAGTGAAATTTTGGTTCCAAAATCGAAGAACCCAGATGAAGACCCAATTGGAGCGCCATGAAAACACTTTGCTGAGACAAGAGAACGATAAACTGAGAGCAGAGAACATGTCGATAAGAGAAGCCATGAGGAATCCTATATGTTCAAATTGTGGAGGCCCAGCCATTATAGGTGAGATTTCCCTCGAAGAACAACACCTAAGGATTGAAAACGCTCGATTGAAGGACGAACTAGACCGAGTTTGTGCTCTCGCCGGAAAGTTTCTCGGCCGACCCATTTCTTCATTGACCAGTCCGATTGGTCCTCCATTGCCAAACTCAAGCTTAGAACTCGGAGTTGGCATCAACGGGTTTGATGGTATGAGCACAGTGCCTTCAACTTTGCCTTTAGGGCCTGGTTTTGGGATATCGAGCCAACTAGCCATGGTTCCTCCGGCGACAACAACGTCGGGGACGACTTTGACCAGACCATCGGGCACTTTGGTCGTCGGCGGTGGGCTTGACAGGTCCATAGAGAGGTCTATGTTTCTGGAACTAGCTTTGGCGGCCATGGACGAGTTGGTGAAGATGGTGCATACAGATGAACCTCTCTGGTTAAGAAGCTTAGAAGAAGGAGGAAGAGAGATTCTGAACCAAGAAGAGTACATGAGAACATTCAGTAATCCTTGCATTGGAATGAGACCAAATGGCTTCGTCTCCGAAGCTTCTAGAGAAACTGGAATGGTCATAATAAACAGCTTGGCCCTCGTTGAAACTCTAATGGATTCAAATCGATGGGCAGAAATGTTTCCTTGTTTAATTGCCAGAACCTCCACCGCTGAAGTAATCTCCGGTGGAATAAATGGAACTAGAAATGGTGCCCTCCAACTGATGCATGCTGAGCTCCAGGTTCTTTCGCCGTTGGTGCCAGTTCGCGAGGTGAATTTTCTTCGTTTCTGCAAGCAACACGCAGAGGGGGTTTGGGCTGTGGTTGATGTCTCCATTGATAACATTCGAGAACCTTCTGGAGCTGCGTCTTTTATGAACTGTAGAAGGCTTCCTTCTGGGTGCGTTGTTGAAGATATGCCAAATGGTTATTCCAAGGTGACATGGGTGGAGCATGCAGAATACGATGAAAGCCAAGTCCACCAATTGTATAGACCCTTGCTGACCTCCGGCATGGGCTTCGGTGCTCAACGGTGGGTCGCCACCCTGCAACGCCAATGCGAGTGCCTCGCCATCTTAATGTCCTCCTCCGTCCCCTCTCGAGATCACTCCGCTGCCATAACTGCCGGCGGCCGGCGGAGCATGCTGAAGCTAGCCCAGCGAATGACCAACAATTTCTGCGCCGGAGTTTGCGCTTCCACCGTGCACAAGTGGAATAAACTGAACGCCGGCAACGTGGACGAGGACGTCCGGGTGATGACTCGAAAGAGCGTGGACGATCCCGGCGAGCCGCCGGGGATAGTTTTAAGCGCAGCCACCTCCGTTTGGCTCCCGGTTTCGCCCCAGAGACTGTTCGATTTCCTACGTGATGAGCATCTCCGAAGTGAATGGGACATACTCTCAAACGGTGGGCCCATGCAAGAGATGGCCCACATCGCCAAAGGCCAAGACCACGGCAATTGCGTCTCTCTCCTACGAGCGAGTGCGATGAATGCAAACCAGAGTAGCATGCTGATACTGCAGGAGACATGCATAGACGCGGCGGGATCTCTTGTGGTGTACGCGCCGGTAGATATCCCGGCCATGCACGTGGTGATGAACGGCGGCGACTCGGCGTATGTGGCGTTGTTGCCATCCGGGTTCGCTATAGTCCCGGATGGGCCAGGGTCGCGGGGGTCACAAACGCCGGCGAGCAACGGGAATGTGAACGGCGGTGGCGTGAATGAGAGGGTGAGTGGGTCCCTCCTGACGGTGGCTTTTCAAATCCTCGTGAATAGCCTTCCTACGGCCAAGCTCACGGTGGAATCGGTGGAGACGGTGAACAATCTCATCTCGTGTACGGTTCAGAAAATAAAGGCCGCTCTTCGCTGTGAAAGCTGA 2550 0.5251 MSFGGFLDNNWGGGGAGGGGGGGGGGAGIVADIPYSNGTNDNRMPSSGSISQPRLVTPPTMAKSMFNSPGLSLALQTSLDEQQGDANRMPESYEPNVGARRSREEEHDSRSGSDNMEGPTSGDDQDAADNRPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIREAMRNPICSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSPIGPPLPNSSLELGVGINGFDGMSTVPSTLPLGPGFGISSQLAMVPPATTTSGTTLTRPSGTLVVGGGLDRSIERSMFLELALAAMDELVKMVHTDEPLWLRSLEEGGREILNQEEYMRTFSNPCIGMRPNGFVSEASRETGMVIINSLALVETLMDSNRWAEMFPCLIARTSTAEVISGGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDNIREPSGAASFMNCRRLPSGCVVEDMPNGYSKVTWVEHAEYDESQVHQLYRPLLTSGMGFGAQRWVATLQRQCECLAILMSSSVPSRDHSAAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDEHLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGSQTPASNGNVNGGGVNERVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALRCES 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4517g00019 849 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 130 845 IPR042160 -
Pral4517g00019 849 MobiDBLite consensus disorder prediction 97 113 - -
Pral4517g00019 849 MobiDBLite consensus disorder prediction 12 141 - -
Pral4517g00019 849 ProSiteProfiles START domain profile. 344 582 IPR002913 GO:0008289
Pral4517g00019 849 Pfam Homeodomain 134 189 IPR001356 GO:0003677
Pral4517g00019 849 SMART HOX_1 132 195 IPR001356 GO:0003677
Pral4517g00019 849 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Pral4517g00019 849 Gene3D - 120 207 - -
Pral4517g00019 849 SUPERFAMILY Bet v1-like 608 842 - -
Pral4517g00019 849 Pfam START domain 353 579 IPR002913 GO:0008289
Pral4517g00019 849 CDD START_ArGLABRA2_like 348 578 - -
Pral4517g00019 849 SMART START_1 353 579 IPR002913 GO:0008289
Pral4517g00019 849 Coils Coil 185 220 - -
Pral4517g00019 849 MobiDBLite consensus disorder prediction 35 85 - -
Pral4517g00019 849 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Pral4517g00019 849 CDD homeodomain 133 191 IPR001356 GO:0003677
Pral4517g00019 849 FunFam Homeobox-leucine zipper protein GLABRA 2 353 578 - -
Pral4517g00019 849 SUPERFAMILY Homeodomain-like 118 191 IPR009057 -
Pral4517g00019 849 FunFam Homeobox-leucine zipper protein HDG1 121 207 - -
Pral4517g00019 849 SUPERFAMILY Bet v1-like 346 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4517g00019 Pral-Chr4517 241824 248523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4517g00019 1 849 Homeobox Transcription Factor Family AT3G61150 64.692 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4517g00019 START 3.1e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4517g00019 K09338 - qsa:O6P43_027188 1367.83