Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4514g00007 ATGGCCGGCGGAGACGCCGGCGACGGAGACCGTACGCCGGAACTCCTAGGCCTGGTTCATGATATCGCTGCAATGTACGGCGGGGCAGCCTGTGGTTCTTCCTCCTCCTCCTCCGCCATTGCTGCCAATGCTGTGTTCAAGAAGGACTGCATTGATCTGGTTCGTCGGATCTCACTTCTCTCCCATTTGTTCGAGGAGATTAGGGATTTAAAGGCTGTTAATTCTGCTGAGTTGGATGCTTCCACTTCTTCCAATGCATCTGCCTCTTCCTGGTCCTCTGATCTGGTGTTTGCTCTTCAATCTGCTAAGCGCCTTCTATGCGGCGCAAGTAACTTCCATTCCAATTGCATTTCTGATGAAGCTGCAAAGACTATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTTTTGAGCAGATTACCGTATGACCATTTGGACATATCAGAGGAAGTTAGAGAACAGGTGGAGTTGGTAAGAACACAGTTGAGTCGAGCCACTGAAAGATATGGATCTATAATCTCAAACATGTCATCTTATGACATATCCCAGCAACTGGCTGAAAACGTTAGTGAACGTAATGGCAAACCTAGGAATCAGTTGCATAAGCAAAACAGCTGCCCTGAGTATTTACTAAAACTGGACAACATTCCTAAAAGCAATGGAGGGAAGAGATGCAGCACATGTCAAGCAAGTCTTCAATTGGAAAGGGCGAGGAGCATCCCTGCCTCTTCGGAGGCTTCCTTATCAAATGTGATTCATCCTGAAAGTCAAGCTACTTCCAAGAAGAAGGGTCCAACCGGAGTTAAAACACCTGAAGCTATTGTTATTCCAGAAGATTTTCTTTGCCCAATATCATTGGAATTAATGAAGGATCCTGTTATTGTGGCCACAGGCCAGACATATGAGCGGTCTTACATACAGAGATGGATAGCTTGTGGAAATGTAACTTGTCCTAAAACTCGCCAGAAGTTGGAAAATTTAAACCTAACACCAAATTATGTTTTGAGGAGCCTTATCAATCAGTGGTGCTTAGATAACAACTTTGAGCAGCCGAGAGGACTAGCCCATGGCAAGCTAAAACAGAGTGATGGATCATTTAGAGATGTTACGGGTGACTTGGCCACCATTGAGGCTCTGGTCTTGAAGCTATCCAGCCATTCCATTGAGGACTGTAGAGCAGCGGTCACTGAAATCCGATCACTTTCCAAGCGGAACACAGACAATAGAATACTAATTGCTGAAGCTGGAGCGATTCCGGTTCTGGTCAACCTGTTAACGTCAGAAGATGTATTGACACAAGAGAATGCAGTTACTTCAATTCTCAACCTCTCGATATATGAAAACAACAAGGGACTTGTAATGCTTGCGGGTGCCATCCCATCAATTGTGCACGTTCTTAGAGTTGGAAGCATGGAAGCAAGAGAGAATGCTGCAGCAACCCTTTTTAACTTATCATTTCCGGATGAGAACAAAATAATAATTGGTTCCTCAGGAGCTTTCCCCCCTTTGATAGAATTGCTCCAAAATGGCAGCCCTAGAGGGAAGAAGGATGCAGCATCAGCATTATTCTACCTATGCATCAGTGAAGGGAACAAGGGTAGGGCCGTTAGATCAGGGATCATCCCTGCATTGTTGAAGATGCTTGCGGATTCCAGAAAGTCAATGGTCGATGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGGGGCAAAGGTTGCTATTGTAAACGCTGGCACTATGCCTGTTTTGATTGATCTTTTGAGCACAGGTCTGCCTCGACACAGAGAGAATTCAGCCGCCATTTTATTTTCCTTGTGTAAGAGAGATGCTAATAATCTTGCTTGTTTACGCACTCTTGGTGGTGTCAAGCCATTGACTGAACTTGCTCTCAGTGGCACTGAGAGGGCTAAACGGAAGGCCACTTCATTATTGGAATATATTCGCAAGTCCCAGGAGCTCTGA 1977 0.4527 MAGGDAGDGDRTPELLGLVHDIAAMYGGAACGSSSSSSAIAANAVFKKDCIDLVRRISLLSHLFEEIRDLKAVNSAELDASTSSNASASSWSSDLVFALQSAKRLLCGASNFHSNCISDEAAKTIVFQFQCVTWKLEKLLSRLPYDHLDISEEVREQVELVRTQLSRATERYGSIISNMSSYDISQQLAENVSERNGKPRNQLHKQNSCPEYLLKLDNIPKSNGGKRCSTCQASLQLERARSIPASSEASLSNVIHPESQATSKKKGPTGVKTPEAIVIPEDFLCPISLELMKDPVIVATGQTYERSYIQRWIACGNVTCPKTRQKLENLNLTPNYVLRSLINQWCLDNNFEQPRGLAHGKLKQSDGSFRDVTGDLATIEALVLKLSSHSIEDCRAAVTEIRSLSKRNTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLVMLAGAIPSIVHVLRVGSMEARENAAATLFNLSFPDENKIIIGSSGAFPPLIELLQNGSPRGKKDAASALFYLCISEGNKGRAVRSGIIPALLKMLADSRKSMVDEALTIMSVLASHQGAKVAIVNAGTMPVLIDLLSTGLPRHRENSAAILFSLCKRDANNLACLRTLGGVKPLTELALSGTERAKRKATSLLEYIRKSQEL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4514g00007 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Pral4514g00007 658 FunFam RING-type E3 ubiquitin transferase 364 658 - -
Pral4514g00007 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Pral4514g00007 658 CDD RING-Ubox_PUB 280 332 IPR045210 -
Pral4514g00007 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Pral4514g00007 658 Gene3D - 358 453 IPR011989 -
Pral4514g00007 658 PANTHER U BOX DOMAIN-CONTAINING 47 651 - -
Pral4514g00007 658 MobiDBLite consensus disorder prediction 248 271 - -
Pral4514g00007 658 SUPERFAMILY ARM repeat 378 652 IPR016024 -
Pral4514g00007 658 Gene3D - 557 658 IPR011989 -
Pral4514g00007 658 SMART arm_5 572 612 IPR000225 GO:0005515
Pral4514g00007 658 SMART arm_5 531 571 IPR000225 GO:0005515
Pral4514g00007 658 SMART arm_5 614 654 IPR000225 GO:0005515
Pral4514g00007 658 SMART arm_5 490 530 IPR000225 GO:0005515
Pral4514g00007 658 SMART arm_5 449 489 IPR000225 GO:0005515
Pral4514g00007 658 SMART arm_5 408 448 IPR000225 GO:0005515
Pral4514g00007 658 FunFam RING-type E3 ubiquitin transferase 279 351 - -
Pral4514g00007 658 Coils Coil 151 171 - -
Pral4514g00007 658 Pfam U-box domain 279 349 IPR003613 GO:0004842|GO:0016567
Pral4514g00007 658 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Pral4514g00007 658 MobiDBLite consensus disorder prediction 248 267 - -
Pral4514g00007 658 Pfam Armadillo/beta-catenin-like repeat 408 447 IPR000225 GO:0005515
Pral4514g00007 658 Pfam Armadillo/beta-catenin-like repeat 491 529 IPR000225 GO:0005515
Pral4514g00007 658 SUPERFAMILY RING/U-box 278 353 - -
Pral4514g00007 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 460 502 IPR000225 GO:0005515
Pral4514g00007 658 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Pral4514g00007 658 Gene3D - 454 556 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4514g00007 Pral-Chr4514 60966 64155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4514g00007 44 655 U-box Gene Family AT1G23030 58.106 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4514g00007 - - gmx:100811123 883.248