Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4512g00055 ATGCCTAGCAGTAACGATGATGAGGATATCGCAAATATGGAGGAAGGTGAAAATAAAGCCTCAAGAGGATCTGGTTTTTGTGGTTCTACTTCCACAGTTCAAATCATACAAAAGGTAATTGCAGAGGTAATAGGGACATACATGGTGGTATTTGCGGGGTGTTGTTCAGTGGTTCTGAATGTGTTAGATGGGAGGGTCACATTTCCTGGGGTGTGTATAGTTTGGGGTTTGACGGTGATGATAATGGTTTACGCGGTGGGGCACATCTCCGGCGGCCACTTTAATCCGGCTGTGACCGTGACGTTCACCATGTTCCGGCAGTTTCCTTGGAGACATGTACCACTGTACATAATAGCACAGGTGGTGGGATCCATACTGGCGAGTGGAACGTTGTACATGTTGTTCGAGGTGGACGATAAGTCGTATTTTGGGACGTTGCCGTCAGGATCAAATGTTCAGTCACTTGTAATGGAGATCATTACTTCATTCTTGTTGATGTTCGTCGTTTCTGCTGTTGCCACTGATACCAGAGCTATCGGAGAATTGGCAGGAATTGCAGTTGGCATGACCATTGCTGTAGATGTCTTCATTGCTGGGCCAGTGTCAGGAGCATCAATGAACCCAGCAAGAAGTATTGGACCAGCAATAGTGATGAACAGATATGAGTCAATATGGGTGTACATAGCTGGCCCTTTCATTGGCACCATTTTTGGTGGCTTTGCCTACAGCCTCATTCGTTTTACTAACAAACCTCTCCGAGAAATCACCAAAGCTTCCATCTTTAAAAAAACTCTCTCCACCCGCTAA 807 0.4572 MPSSNDDEDIANMEEGENKASRGSGFCGSTSTVQIIQKVIAEVIGTYMVVFAGCCSVVLNVLDGRVTFPGVCIVWGLTVMIMVYAVGHISGGHFNPAVTVTFTMFRQFPWRHVPLYIIAQVVGSILASGTLYMLFEVDDKSYFGTLPSGSNVQSLVMEIITSFLLMFVVSAVATDTRAIGELAGIAVGMTIAVDVFIAGPVSGASMNPARSIGPAIVMNRYESIWVYIAGPFIGTIFGGFAYSLIRFTNKPLREITKASIFKKTLSTR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4512g00055 268 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4512g00055 268 PANTHER AQUAPORIN NIP2-1 12 258 IPR034294 -
Pral4512g00055 268 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4512g00055 268 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4512g00055 268 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4512g00055 268 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4512g00055 268 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4512g00055 268 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4512g00055 268 NCBIfam MIP family channel protein 41 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4512g00055 268 SUPERFAMILY Aquaporin-like 34 255 IPR023271 -
Pral4512g00055 268 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Pral4512g00055 268 Gene3D Glycerol uptake facilitator protein. 3 257 IPR023271 -
Pral4512g00055 268 Pfam Major intrinsic protein 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4512g00055 Pral-Chr4512 418615 420489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4512g00055 6 268 Major Intrinsic Protein MIP AT5G37820 61.049 1.49e-119 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4512g00055 K09874 - aew:130768857 368.237