Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4506g00053 ATGGATTCTGACGAAGAAAATAGGGTTCTTTTTTATCGGCAAGTTAAGTCTCACGGTGATGGATTTGATCAGATGATCGAGGACCAGAAGGATAACGAAGGGTTCGATCAGGGATCTTCCGACGAGTTACAGAAGATGAGCGAAAAGCCGTTTTCGTCTTACTCGGAGCTCCGCGAAGGAAAATCTGAGAGTAAAACTAACGGAGCTTCAGCTTCAGGTTCGTCATCAGTTCGAGTTTGTGATTTCTGTGGAAGAGAGTTCAGTTCTGGAAAAGCCCTAGGAGGTCACAGAAGATATCACATTCAAGCTCAGAAAAAGATGGAGGCGCAGAATCAGGCTCAAGAACGAGAAAAGGTGAATCGTCATCAATATCCTTCAACTAATTATACCCTAAGAATCAAGCCCAATAATATCTCTGAGGATTGCGTCGGCGATGATAATCTCATCATCAAATCGAACATTGGGAATCTCAATTCTTCGAGATCTTTCCGTTGTTGTGTCTGCGACAAGAATTTCCCCTCCAAGAAGTCATTGTTCGGCCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCTTTCACTGATCACGTTCTGGCTTCCTCTTCTTCTGCAGAAGTCTTCAAAGTAGAAGATAAGCATCAAGATAATGATGAAGTTAATGTTAACAACAATAATGGATCTTCATCTTCAACTTTAGAAGAGTCAGTAGTAGTTGATCTTTCTTCATCTTGTTCTGGAAGTAGCTGGCGCAAGAAAGATAGAAGAGGAAGAAAAAGCATTGGAGCTGCAGAAGCAGCTCAAACCCTTATTGAGATGTATCTCTATGGAAGCTACGAGCCACTATTACCAGTGAAGAAAAGGAATAGGGATGTGAATGATGTTGGTTCTTCACAACCTGGAAAACAAAGCTTGGATTACAAGGAGAAGCTAGAGTTAAAAGCTGATGAGAATAATATCTGGGAGATGAAAGTGATCAGCTTAATGAAAGAGAAGAAGCTTAGGAAGAAGAACAAGAAGTTAAAGAAAGGTCCAGAGATTATCAAGTCAGAAGGAGAAGTGCTGATAAGAACTCTGAAGGAAGAAGTGAAAAAGTCACAAAGCTATAGGAAAGAACATAGTTATAAGCACCAAGGGAAGGAAGTAGTGGAAGAACAAAGAGGAGGAGGAGGAGAAGCAGAAGAAGAAGAGGACAAGGTTTGCATCAATGGAGCTTTGTCAAGTGCAGGACTGATGAGTTGTGAAGAAGAGGACGAAGAAGGAGAAGGAGAAGGAGCGTCTCTGATTGTTAGTGAAGAGAGATTAGGATCAAGTTCGAATGACCAAGAGAATAACAGTAATGAAGAGGAATTGGGAGAGGCAAGTCATCAATCTGCAGGTTCGAAAATTCTGGATTTTGATCTGAATGTGCCTTATGTTTCGGAGCACGAAGTAACTGATGATATATAA 1458 0.4129 MDSDEENRVLFYRQVKSHGDGFDQMIEDQKDNEGFDQGSSDELQKMSEKPFSSYSELREGKSESKTNGASASGSSSVRVCDFCGREFSSGKALGGHRRYHIQAQKKMEAQNQAQEREKVNRHQYPSTNYTLRIKPNNISEDCVGDDNLIIKSNIGNLNSSRSFRCCVCDKNFPSKKSLFGHMRSHPEREWRGMNPPFTDHVLASSSSAEVFKVEDKHQDNDEVNVNNNNGSSSSTLEESVVVDLSSSCSGSSWRKKDRRGRKSIGAAEAAQTLIEMYLYGSYEPLLPVKKRNRDVNDVGSSQPGKQSLDYKEKLELKADENNIWEMKVISLMKEKKLRKKNKKLKKGPEIIKSEGEVLIRTLKEEVKKSQSYRKEHSYKHQGKEVVEEQRGGGGEAEEEEDKVCINGALSSAGLMSCEEEDEEGEGEGASLIVSEERLGSSSNDQENNSNEEELGEASHQSAGSKILDFDLNVPYVSEHEVTDDI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4506g00053 485 MobiDBLite consensus disorder prediction 369 404 - -
Pral4506g00053 485 MobiDBLite consensus disorder prediction 20 38 - -
Pral4506g00053 485 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Pral4506g00053 485 MobiDBLite consensus disorder prediction 369 462 - -
Pral4506g00053 485 Gene3D Classic Zinc Finger 78 185 - -
Pral4506g00053 485 MobiDBLite consensus disorder prediction 20 76 - -
Pral4506g00053 485 SUPERFAMILY beta-beta-alpha zinc fingers 79 185 IPR036236 -
Pral4506g00053 485 SMART c2h2final6 163 185 IPR013087 -
Pral4506g00053 485 SMART c2h2final6 78 100 IPR013087 -
Pral4506g00053 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Pral4506g00053 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Pral4506g00053 485 MobiDBLite consensus disorder prediction 215 236 - -
Pral4506g00053 485 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 163 480 - -
Pral4506g00053 485 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Pral4506g00053 485 Pfam C2H2-type zinc finger 163 187 - -
Pral4506g00053 485 Pfam C2H2-type zinc finger 78 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4506g00053 Pral-Chr4506 744368 745971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4506g00053 79 196 C2H2 Transcription Factor Family AT2G26940 30.894 1.11e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4506g00053 zf-C2H2_6 2.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4506g00053 - - pcin:129302761 451.825