Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4506g00045 ATGGGAAATTCCTGCAGGAAACCCATTGTTCACGTGTCTTCCTCTAACATTTCTGGAAAGGCTGAGTTTCAAAGTGGGACGAGTAAGAATTCAAATTCTTCAGAACGAAAAGCTGCATCACAAACTTTAGAACCAACCAGCGACAGATCCATCTCTTCCAGTCTTAAATCCTTCAGCTTCAATGATCTAAAAGAAGCCACAAGGAATTTCAGACAAGAAAACCTAATTGGGGAAGGAGGCTTTGGGTTTGTGTACAAGGGATGGATTAATGAGAACTCCTTTGCTCCCACAAGACCTGGGGGTGGGATCATGGTGGCCATCAAGAAACTTAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGTCAACTTCACCATGAAAATTTAGTGAAACTTATTGGCTATTGCTCAGATGCTAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAGAGGAAGTTTGGAGAATCATTTATTCAGAAAAGGTGTTCAGCCCATATCCTGGGCTTCACGGATCAATATTGCAGTTGGCGTTGCTAGAGGATTAGCATTTTTACATACCTTGGATGCAAATGTTATCTACCGCGACTTAAAGGCTTCTAATGTATTACTTGATTCGGACTTCAACTCAAAACTTTCAGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAATTATTGGAACTCAGGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCACTTGACACCGAGGAGCGATGTATACAGCTTTGGTGTTGTCTTGTTAGAGTTACTGACCGGGAGAAGGGTGGTAGAGGCTGACAAAGCCGGAAAGCCACGGGAAAATCTGGTTGATTGGGCAATGCCATTTCTCAAAGAGGGCAAGCGGATTTCAAGGATCATAGATTTGAGGTTAGGTGGTCAGTACTCGAAAAAAGGAGCTCAAGCTGCAGCTGCACTTGCATATCAATGCCTAAATGCAGATCCAAAATATAGACCAACTATGATACATGTTGTAGCCACCTTGGAAGAACTCCATTCCTCAAACATAACAATCCCAAGGACCCCACCAAAGTCTGAGTCTATAAACAATACCATCAAGCATGCTCGTCATTCCCTAAAGCCCAAGAGAAACACACGCTGA 1170 0.4291 MGNSCRKPIVHVSSSNISGKAEFQSGTSKNSNSSERKAASQTLEPTSDRSISSSLKSFSFNDLKEATRNFRQENLIGEGGFGFVYKGWINENSFAPTRPGGGIMVAIKKLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSDAKNRLLVYEFMQRGSLENHLFRKGVQPISWASRINIAVGVARGLAFLHTLDANVIYRDLKASNVLLDSDFNSKLSDFGLARDGPTGDNTHVSTRIIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEADKAGKPRENLVDWAMPFLKEGKRISRIIDLRLGGQYSKKGAQAAAALAYQCLNADPKYRPTMIHVVATLEELHSSNITIPRTPPKSESINNTIKHARHSLKPKRNTR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4506g00045 389 SMART serkin_6 70 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4506g00045 389 CDD STKc_IRAK 76 354 - -
Pral4506g00045 389 PANTHER OS01G0588500 PROTEIN-RELATED 34 355 - -
Pral4506g00045 389 MobiDBLite consensus disorder prediction 1 53 - -
Pral4506g00045 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Pral4506g00045 389 SUPERFAMILY Protein kinase-like (PK-like) 52 372 IPR011009 -
Pral4506g00045 389 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 364 - -
Pral4506g00045 389 MobiDBLite consensus disorder prediction 359 377 - -
Pral4506g00045 389 MobiDBLite consensus disorder prediction 359 389 - -
Pral4506g00045 389 FunFam Serine/threonine-protein kinase BIK1 36 155 - -
Pral4506g00045 389 MobiDBLite consensus disorder prediction 8 53 - -
Pral4506g00045 389 Gene3D Transferase(Phosphotransferase) domain 1 156 370 - -
Pral4506g00045 389 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
Pral4506g00045 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Pral4506g00045 389 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4506g00045 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4506g00045 Pral-Chr4506 508239 512048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4506g00045 48 367 Glycoside Hydrolase AT3G07070 49.394 1.68e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pral4506g00045 Pkinase 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4506g00045 - - gmx:102664409 568.155