Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4506g00042 ATGCTGTTCGGGTGTAATTGGTGGGGCTGTCTTTGGGTTCGTAGAAACTTCTGGTATTTAAGAGATCACAGACATACCTCATTATCACTTGTCTGCCAGCCTTCAAGTCTTTCTTATCTCCATTGTAAAGTTCAGGCAACAATTTCTTTGAAGGGTGTCGGGGCAGCTTGCTTTTTGGATTCGTATTCAATATTTTATTTGAGGGCAATCAATACTGAAGACCATCTCATTGATTTCCAGGGCAGGTTCCTTTTAAGTGGGGGAAGAGTTGGACTTTATCTGAAAGCTGATAAATCGTTCGGAATGAGCCAGCCTAAAATCAAGCGTTGTATAGGTAAATATGAGGTGGGAAGGACCATTGGTGAGGGAACATTTGCGAAAGTGAAATTTGCACGGAACTCTGAGACTGGGGAGCCCGTGGCTATCAAAATTCTGGAGAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAGCAGATCAGGCGGGAAATAGCAACAATGAAGTTAATCAAGCATCCAAATGTTGTGCGATTATATGAGGTTATGGGGAGCAGGACAAAAATATATATAGTTTTGGAGTTTGCTACTGGAGGAGAGCTCTTTGACAAAATTGTAAACCATGGACGAATGAGTGAAAAAGAAGCACGTACTTATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCATAGCAGGGGTGTCTACCACAGAGACCTCAAGCCAGAAAATTTGCTGCTGGATGCTCATGGCCAGCTTAAAGTTTCTGATTTTGGGTTGAGTGCGCTATCACAGCAAATCAAGGACGATGGCCTGCTTCATACTACATGTGGAACTCCAAATTATGTTGCTCCTGAGGTCCTTGATGATAGAGGCTATGATGGAGCAACTGCAGACTTGTGGTCTTGTGGAGTGATTCTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACCCTAATATTATGAACCTGTATAAAAAAATCTCAGCTGCTGAATTTACGTGTCCCCCATGGATTTCATTCAGTGCCAGGAAATTGATAACTCGAATTTTGGATCCTAACCCCGTGACTCGTATCACTATATCTCAAATCTTGGGCGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGAAAGGGGAGACCAACCTTGATGACATTGAAGCTGTCTTTAGAGATTCTGAAGAACACCTTGTGACAGAGAAGAAGGAAGAACAGCCGACAGCCATCAATGCATTTGAATTAATATCCATGTCCAAAGGGCTAAACCTCGAAAACTTGTTTGATATTGAGCAGGCCCTGAAAAGAGAAACAAGGTTCACATCAAGATGCCCTGCGAAAGAGATAGTGGACAAGATCGAAGAAGCTGTAAAGCCTCTTGGTTTTGACGTGCAGAAGAAAAACTACAAGATGAGGCTTGAGAATGTGAAAGCAGGAAGGAAGGGAAACCTTAATATTGCCACTGAGATATTTCAAGTGGCACCTTCTCTTCACATGGTCGAGGTGAGGAAAGCAAAAGGTGATACATTGGAGTTTCACAAGTTCTACAAGAGTCTTTCAACAAGGCTTGATGACGTTGTTTGGAAAGCAGAGGACGATACTCAAGAAACGGAGTGA 1623 0.4233 MLFGCNWWGCLWVRRNFWYLRDHRHTSLSLVCQPSSLSYLHCKVQATISLKGVGAACFLDSYSIFYLRAINTEDHLIDFQGRFLLSGGRVGLYLKADKSFGMSQPKIKRCIGKYEVGRTIGEGTFAKVKFARNSETGEPVAIKILEKEKVLKHKMAEQIRREIATMKLIKHPNVVRLYEVMGSRTKIYIVLEFATGGELFDKIVNHGRMSEKEARTYFQQLINAVDYCHSRGVYHRDLKPENLLLDAHGQLKVSDFGLSALSQQIKDDGLLHTTCGTPNYVAPEVLDDRGYDGATADLWSCGVILFVLLAGYLPFDDPNIMNLYKKISAAEFTCPPWISFSARKLITRILDPNPVTRITISQILGDEWFKKDYKPPVFEEKGETNLDDIEAVFRDSEEHLVTEKKEEQPTAINAFELISMSKGLNLENLFDIEQALKRETRFTSRCPAKEIVDKIEEAVKPLGFDVQKKNYKMRLENVKAGRKGNLNIATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKSLSTRLDDVVWKAEDDTQETE 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4506g00042 540 Pfam Protein kinase domain 114 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4506g00042 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Pral4506g00042 540 FunFam Non-specific serine/threonine protein kinase 406 531 - -
Pral4506g00042 540 FunFam Non-specific serine/threonine protein kinase 107 410 - -
Pral4506g00042 540 Gene3D Transferase(Phosphotransferase) domain 1 194 376 - -
Pral4506g00042 540 ProSiteProfiles NAF domain profile. 407 431 IPR018451 GO:0007165
Pral4506g00042 540 SUPERFAMILY Protein kinase-like (PK-like) 111 384 IPR011009 -
Pral4506g00042 540 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Pral4506g00042 540 SMART serkin_6 114 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4506g00042 540 ProSiteProfiles Protein kinase domain profile. 114 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4506g00042 540 Pfam NAF domain 409 468 IPR004041 GO:0007165
Pral4506g00042 540 CDD CIPK_C 413 527 - -
Pral4506g00042 540 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 108 520 - -
Pral4506g00042 540 CDD STKc_SnRK3 113 368 - -
Pral4506g00042 540 Gene3D Phosphorylase Kinase; domain 1 105 193 - -
Pral4506g00042 540 Gene3D Kinase associated domain 1, KA1 406 531 - -
Pral4506g00042 540 FunFam Non-specific serine/threonine protein kinase 105 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4506g00042 Pral-Chr4506 484238 490731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4506g00042 106 492 CBL-interacting serine-threonine protein kinases AT2G26980 81.912 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pral4506g00042 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4506g00042 - - pcin:129303143 858.981