Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4506g00041 ATGCTGTTCGGGTGTAATTGGTGGGGCTGTCTTTGGGTTCGTAGAAACTTCTGGTATTTAAGAGATCACAGACATACCTCATTATCACTTGTCTGCCAGCCTTCAAGTCTTTCTTATCTCCATTGTAAAGTTCAGGGTGTCGGGGCAGCTTGCTTTTTGGATTCGTATTCAATATTTTATTTGAGGGCAATCAATACTGAAGACCATCTCATTGATTTCCAGGGCAGGTTCCTTTTAAGTGGGGGAAGAGTTGGACTTTATCTGAAAGCTGATAAATCGTTCGGAATGAGCCAGCCTAAAATCAAGCGTTGTATAGGTAAATATGAGGTGGGAAGGACCATTGGTGAGGGAACATTTGCGAAAGTGAAATTTGCACGGAACTCTGAGACTGGGGAGCCCGTGGCTATCAAAATTCTGGAGAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAGCAGATCAGGCGGGAAATAGCAACAATGAAGTTAATCAAGCATCCAAATGTTGTGCGATTATATGAGGTTATGGGGAGCAGGACAAAAATATATATAGTTTTGGAGTTTGCTACTGGAGGAGAGCTCTTTGACAAAATTGTAAACCATGGACGAATGAGTGAAAAAGAAGCACGTACTTATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCATAGCAGGGGTGTCTACCACAGAGACCTCAAGCCAGAAAATTTGCTGCTGGATGCTCATGGCCAGCTTAAAGTTTCTGATTTTGGGTTGAGTGCGCTATCACAGCAAATCAAGGACGATGGCCTGCTTCATACTACATGTGGAACTCCAAATTATGTTGCTCCTGAGGTCCTTGATGATAGAGGCTATGATGGAGCAACTGCAGACTTGTGGTCTTGTGGAGTGATTCTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACCCTAATATTATGAACCTGTATAAAAAAATCTCAGCTGCTGAATTTACGTGTCCCCCATGGATTTCATTCAGTGCCAGGAAATTGATAACTCGAATTTTGGATCCTAACCCCGTGACTCGTATCACTATATCTCAAATCTTGGGCGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGAAAGGGGAGACCAACCTTGATGACATTGAAGCTGTCTTTAGAGATTCTGAAGAACACCTTGTGACAGAGAAGAAGGAAGAACAGCCGACAGCCATCAATGCATTTGAATTAATATCCATGTCCAAAGGGCTAAACCTCGAAAACTTGTTTGATATTGAGCAGGCCCTGAAAAGAGAAACAAGGTTCACATCAAGATGCCCTGCGAAAGAGATAGTGGACAAGATCGAAGAAGCTGTAAAGCCTCTTGGTTTTGACGTGCAGAAGAAAAACTACAAGATGAGGCTTGAGAATGTGAAAGCAGGAAGGAAGGGAAACCTTAATATTGCCACTGAGATATTTCAAGTGGCACCTTCTCTTCACATGGTCGAGGTGAGGAAAGCAAAAGGTGATACATTGGAGTTTCACAAGTTCTACAAGAGTCTTTCAACAAGGCTTGATGACGTTGTTTGGAAAGCAGAGGACGATACTCAAGAAACGGAGTGA 1605 0.4243 MLFGCNWWGCLWVRRNFWYLRDHRHTSLSLVCQPSSLSYLHCKVQGVGAACFLDSYSIFYLRAINTEDHLIDFQGRFLLSGGRVGLYLKADKSFGMSQPKIKRCIGKYEVGRTIGEGTFAKVKFARNSETGEPVAIKILEKEKVLKHKMAEQIRREIATMKLIKHPNVVRLYEVMGSRTKIYIVLEFATGGELFDKIVNHGRMSEKEARTYFQQLINAVDYCHSRGVYHRDLKPENLLLDAHGQLKVSDFGLSALSQQIKDDGLLHTTCGTPNYVAPEVLDDRGYDGATADLWSCGVILFVLLAGYLPFDDPNIMNLYKKISAAEFTCPPWISFSARKLITRILDPNPVTRITISQILGDEWFKKDYKPPVFEEKGETNLDDIEAVFRDSEEHLVTEKKEEQPTAINAFELISMSKGLNLENLFDIEQALKRETRFTSRCPAKEIVDKIEEAVKPLGFDVQKKNYKMRLENVKAGRKGNLNIATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKSLSTRLDDVVWKAEDDTQETE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4506g00041 534 FunFam Non-specific serine/threonine protein kinase 99 187 - -
Pral4506g00041 534 Pfam NAF domain 403 462 IPR004041 GO:0007165
Pral4506g00041 534 CDD CIPK_C 407 521 - -
Pral4506g00041 534 FunFam Non-specific serine/threonine protein kinase 400 525 - -
Pral4506g00041 534 Pfam Protein kinase domain 108 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4506g00041 534 Gene3D Transferase(Phosphotransferase) domain 1 188 370 - -
Pral4506g00041 534 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 102 514 - -
Pral4506g00041 534 CDD STKc_SnRK3 107 362 - -
Pral4506g00041 534 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Pral4506g00041 534 ProSiteProfiles NAF domain profile. 401 425 IPR018451 GO:0007165
Pral4506g00041 534 SMART serkin_6 108 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4506g00041 534 Gene3D Phosphorylase Kinase; domain 1 99 187 - -
Pral4506g00041 534 Gene3D Kinase associated domain 1, KA1 400 525 - -
Pral4506g00041 534 SUPERFAMILY Protein kinase-like (PK-like) 105 378 IPR011009 -
Pral4506g00041 534 ProSiteProfiles Protein kinase domain profile. 108 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4506g00041 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Pral4506g00041 534 FunFam Non-specific serine/threonine protein kinase 101 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4506g00041 Pral-Chr4506 484238 490731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4506g00041 100 486 CBL-interacting serine-threonine protein kinases AT2G26980 81.912 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pral4506g00041 Pkinase 1.1e-73 CL0016