Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4504g00004 ATGGAGTTCGTGGGCAGAACTGTTAAGAAGGAGGTCAAGGGGGTTGGGATTATTTCGGGAACAGTGAAATCTTTCGATTCATCGTCTGGTTTCGTTGAGATCGTTTATGAAGATGGTAATTCTGAGGAGCTTGAATCGTCTGACGTGGCTTCTCTTGTTCAAGGGGAACCAGAGTTAGTAAAGGTGAAGCGCCGGGGAAGGAAACCCAAGAAGAGGCGTCGTGTAGAAAGGAAGCATGACACCAGTGGAAGCCCAGGTAATATTGATGAGAATTTGGGTGTTTCCATGCTAAATGATTCTGAATTGAGGGGGGTTTCTGATGAAGGTGTTTCTTCTAGTGGGAATTTAAAAGTAAATGGTGAATTAGATAGTGGGTTGAAGGGAAGCCCGGGGGCGGCAAATGGGGCAGGAGGGAATTTGACTTTGGGAACTGAAATAATGGGGAATTTGAATTGGAGTGCCAGCTCTAACGGGATCAAAGAAATTCAACGGACGGAAAGCGGGAATGAAGAGAAATCCAAAGAAAGTATATCTACTAATGGTAATTCCAGCATAACGGATTGTGTAAAAGACGGGCTTGATTTGAATGCCAGACTTAACCTGAACGAGGCCTTGGATCTGAATGATGGATGTAGCTCACATGTTAATACTGAGAATGGTTTGAAGGAACGGGGTTGCATTGATTTAAATGTGGATGTGAATCATGAAATTGATGCCAGCGGGGACGTGACTGCTGTAGATTGTCCAGCAGTTGGAATTTCGAAGCGGGAATGTAATTTTGATTTGAATGAGGAGGTATGCGATGAAGCTAAGGAAACTCAGGGTGATAATGCTGGAGAGAAACTGTCAGATGGAGGTGGTTTGTTTAAAATGGGGCAAAGCCCTAAGTCAGAGACGGATATTAATCAAAATTCTGTACAAGATGATAGTGTTAAAGGAAATTTGGATTATATCCCTGATTCGATGAAATTGGAGGGAATTGATTGTTTCCGTGAGCGTACAGGTGAAGACGCTTCTGTGAGTATGATTGAGCAAAAGGAAGATGGAGGTACTGTGGCTTTTGACTCTCATGGGGTTTCAAATGCTATTTCTTCTAAGGATTGTGATTCTCTGGAGGTTTGGCAGGAGCATAGTCCTGAAGCTGGTATTGCTATAACTCAAGAATGTCAAAATGATCCAGGAAGCCAATATAAACGGAAGGGCCGAAGGAAGAGAAGAAAACTATCAGAGAATCTAAAGGCCGCTCCAGAGACAGTTTTAAGGAGGAGTTCTCGCCGTGCATCAGCTTTAAAACGTGACTCAAGCCCTATAACAAGGAATGTGATGGATGATCCTTTCATGTCTCCAGGGCCCAGTGCCATAACAGAAGAAAAAACGGTTGTTTCTGGTTCTGAGCAGTATGAACAGTGCAGTGAACTTCCGCCAAAGCTGCAACTCCCCCCTTCTTCTCAAAATTTGAACTTAGATAACATTCCTATTCTTGATCTTTTTTCCATTTATGCTTGTTTGAGGTCCTTCAGTACTATACTATTTTTAAGTCCTTTTGAGTTGGAAGATTTTGTAACTGCACTGAAGAGTGTAAATCCTAACATATTATTTGACAACATTCATGTTTCTATTTTACAAACTCTTAGAAAGCACTTGGAATACCTTTCAAATGAGGGTTGCCAATCTGCATCCGATTGCCTGAGAAATTTGAACTGGGATTTGTTGGATCTGGTCACATGGCCTATTTTTATGGCTGAGTATCTTCTGATTCATGGTTCTGGACTTAAAACTGGTTTTGATATTAAGTACTTCATGTTTGGGGGTGACTACTACAAGCAGCCTGTAACTTTAAAGATTGAAATTCTTCAGTGCCTTTGTGATGATATGATGGAAGTGGAAGCCATAAGGTTGGAGCTTAACAGAAGATCTTTGGTTACTGAGGCTGATATGAGTTTTGATCAAAGTATGTATTTTGACATTTGCAAGAAAAGAAGAGCTCCGATGGACATGTCTGGTGGCTTTTCTCTGTCTGAGGAGATTGTTGATGTCACAACTGACTGGAACAGTGATGACTGTTACCTTTGCAAGATGGATGGAAGTTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCACTCCAGGTGTGTAGGGGTTGCAAATGACCATTTACCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTGGCAGACGTAAGCCTTGGATGAAACCACAAAAATCACTTCGAGGAGCAGATCTTTTAGGAATTGATCCTCATGGTCGTCTTTATTTTGATAGCTGTGGTTACCTGTTAGTATCAGATTCATCTGACATGAGATCCTTGTTCAATTACTACCACATTAATGATCTGCATGTTGTAATTGAGGTGCTAAAAGCGGCTGATGCTTTCTATGGTAGCATATTAATGGCAATCTGCAAGCACTGGGAAATTCCTTTTAACTTAAATGGAGCAGCTTATCAGCTGGAACTCTCAAATCAAAGTGCTAGCAGGTACATGCACATGAAGACAGAATACTCTGCTATATATCCATCCCCAGCACCTTTTTCATCCTCAGAAGCATTCTTGGACACTAATCAGGCTGCCGATCAAAGAAATTATGAAGAAACTTCTACTGCACAACCTTTTGGCCAAGAGTTTCTCAAAGCTGAGAGACAGTTAGATTCAGTGATAACAACAGAAAGTCCCTGTGTTGCTTCAGAGGTATCAGCTGAAACAACAAAAATGAGATCAACCACTGATGATGATCCTCGAACATATGGATTCCATGATTCCAATAGACCTGGTGGAGCCCTGAATCAGCCGGGAATACCAGAGAAATTGCACACAGTCAGTCGTGCTTCTCTGAGGTCTTCCCGCTTAGATACAAGCCACAAGGTAAACTTAACATCTGCAGGTGCTGGTTATACCGCATCAGCTAAGTCCACTGGGAATAGAGCTACTTCAGAAATGCTATGTGGAACTGACTACATAAACTATTACAGCTTTGCTCGAACGGCTTCACTAGTGGCTGAGGAGTTGATACGTAAATCTCCTGAAAAAACCAACAAGAGTATTGAAATGTCTGAAGAAGACTTAATTTCAGAACAAGCGAAGGCTATTATTAAGAAATCTACGAACTTCTGCTGGCCAAGTTCTCAAAGTGTTAATGCAGCTGCCCGAAAGGAAAAATGTGGGTGGTGCTTTACATGCAAAGTTGAAAATGATGACAGAGATTGCTTGTTTAACTCTGTGGTGATGCCTATTCAGGAAGTTTCTAAAAGTGATTTAGTTGGATTTCAACCAAAGAACCAGAATGCCCATCTTAAAGATGTCATATTTTATATTCTCTCCCTTGAGGATCGATTACGTGGGCTTCTACTGGGGCCATGGTTGAGCCTCCATCATTCTAAGAATTGGCGTAACAATCTTCTTAAGGCATCTGATGTTGCATCTATTAAATGCTCATTACTGACTTTAGAGTCCAACTTGCGGCCTCTTGCTCTTTCGGCAGACTGGTGGAAACATGTGGATTCTGCTGTTACCATGGGTTCGGCTTGTCATATTGTGGCCAGTTCACGCACATCTTGGAGGCATAGTATTGGAAGGAAAAGGGCAAGGTGCTCTGATATTGAGTCCAGTGCATCTTCTAACGCAAGTGGTTTGGGAACGTATTGGTGGAGAGGTGGTCGGCTTTCCCGTCATTTGTTTAATTGGAAGGTTCTGCCATGCTCTTTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTGCAAAGATACCGGGCATTCTATATCTTGAGAATTCTGATTTTCCAAAGAGAAGCAAATGTGTTGCTTGGAGAGCTGCTGTTGAGACATCAATTAGTGTGGAGCAACTTGCCATCCAGGTTAGAGAGCTTGATTCAAACATTAGGTGGCATGACATTGAGAATACTCATCCTCTATGGGCGTTGGACAAGGAATCCAGAAAATCAATCAGGCTGTTCAAAAAAGTAATTGTACGCAGGAAGAGCACTGAAAGGGAAACCGTAAAATATCTTCTTGATTTTGGGAAGAGAAGGGCTATACCAGATATTGTTAAGAAACATGGTTCTTTGTTGGAAGAATCCTCAAGTGACAGGAAAAAATATTGGCTGGAAGAACCTTATGTTCCCTTGCATCTTATAAAGAATTTTGAGGACAAAAAAATTGCTCGCAAGTCCAATGAAACGAAACCAGGAAAAGTTCTGGCGATCAGTGGATTTAATAAGAGAGCTCCGCAAAAACGGGGTTTTTCATATTTGTTTTCTAGGATGGAAAGGCCTACCTATCATCAGTGCGGCCACTGCAACAAAGATGTCCTAACCAGGGAAGCTGTGAGCTGCCAGTACTGTAATGGATTCTTCCATAAGAGGCATGTCAGAAAATCTGGTAGCACTGCTGAATGCAGATATTCGTGTCACAGATGCCTGGATGGGATGCATGTAAATTCTAATTCTAAAAGAAGAAAACTTGACCCAAAACTAGGGAATATTCAGTCACAAAAGGGTCGAAAGGTTCCTTCAGTGGGCAGACCAGTTAAGCAAAAAGGCAGCAAAAAGCCATTGAGCAAGAGGCGGCAAGGAAAATCTCAAACCAATAAGAAGGTCCCGTCAAGTATACCTCTTCGTCGATCAGCTAGGAAGGCCAAATGCTTGTATGTGCAAAAGAAAAGGAATGTGGGACGTAAAAAGGGAAAGAAAAGTAAATCCAAGAAGGTGACATCTAGGAAGCCCAAGGAAACATCTAGGAAGCCCAAGGAAACTACTTCTCGTTCTAAGACAGCAGTAACTTTTGAGCGTAAGAAACGAACTCATATCTGTAATAGTTACTGGCTCAATGGTCTTAGGTTGTCCACAAAGCCAAATGATGAACGAGTAATGCTGTTTAAGGAGAAAAAGCATCTTGGTACCTCAGAAGGTCTTTCTAGCACCTTTGATCAACCAAAATGTCATCTTTGTTGTGGAGATGGGTGCACTTTGAATTATATTGCTTGTGAAATCTGTGGAGAGTGGTTTCATGGGGATGCTTTTGGACTCACTCTGGAGAATGTCAGACAACTCATTGGATTTCGGTGTCATGTTTGTCGTGATAGGACTGCACCAATGTGTCCCCACAAGAATAATAATGCCATGACTCATGCTGAAATCAAAGCAGCAACCGAGTATGCAGAGGAACTACCTAATTCTGTTTCACTTCAGCCATTGAGTCAGGTTTAG 5220 0.4205 MEFVGRTVKKEVKGVGIISGTVKSFDSSSGFVEIVYEDGNSEELESSDVASLVQGEPELVKVKRRGRKPKKRRRVERKHDTSGSPGNIDENLGVSMLNDSELRGVSDEGVSSSGNLKVNGELDSGLKGSPGAANGAGGNLTLGTEIMGNLNWSASSNGIKEIQRTESGNEEKSKESISTNGNSSITDCVKDGLDLNARLNLNEALDLNDGCSSHVNTENGLKERGCIDLNVDVNHEIDASGDVTAVDCPAVGISKRECNFDLNEEVCDEAKETQGDNAGEKLSDGGGLFKMGQSPKSETDINQNSVQDDSVKGNLDYIPDSMKLEGIDCFRERTGEDASVSMIEQKEDGGTVAFDSHGVSNAISSKDCDSLEVWQEHSPEAGIAITQECQNDPGSQYKQXKGRRKRRKLSENLKAAPETVLRRSSRRASALKRDSSPITRNVMDDPFMSPGPSAITEEKTVVSGSEQYEQCSELPPKLQLPPSSQNLNLDNIPILDLFSIYACLRSFSTILFLSPFELEDFVTALKSVNPNILFDNIHVSILQTLRKHLEYLSNEGCQSASDCLRNLNWDLLDLVTWPIFMAEYLLIHGSGLKTGFDIKYFMFGGDYYKQPVTLKIEILQCLCDDMMEVEAIRLELNRRSLVTEADMSFDQSMYFDICKKRRAPMDMSGGFSLSEEIVDVTTDWNSDDCYLCKMDGSLICCDGCPAAFHSRCVGVANDHLPEGDWYCPECAIGRRKPWMKPQKSLRGADLLGIDPHGRLYFDSCGYLLVSDSSDMRSLFNYYHINDLHVVIEVLKAADAFYGSILMAICKHWEIPFNLNGAAYQLELSNQSASRYMHMKTEYSAIYPSPAPFSSSEAFLDTNQAADQRNYEETSTAQPFGQEFLKAERQLDSVITTESPCVASEVSAETTKMRSTTDDDPRTYGFHDSNRPGGALNQPGIPEKLHTVSRASLRSSRLDTSHKVNLTSAGAGYTASAKSTGNRATSEMLCGTDYINYYSFARTASLVAEELIRKSPEKTNKSIEMSEEDLISEQAKAIIKKSTNFCWPSSQSVNAAARKEKCGWCFTCKVENDDRDCLFNSVVMPIQEVSKSDLVGFQPKNQNAHLKDVIFYILSLEDRLRGLLLGPWLSLHHSKNWRNNLLKASDVASIKCSLLTLESNLRPLALSADWWKHVDSAVTMGSACHIVASSRTSWRHSIGRKRARCSDIESSASSNASGLGTYWWRGGRLSRHLFNWKVLPCSLVTKAARQAGCAKIPGILYLENSDFPKRSKCVAWRAAVETSISVEQLAIQVRELDSNIRWHDIENTHPLWALDKESRKSIRLFKKVIVRRKSTERETVKYLLDFGKRRAIPDIVKKHGSLLEESSSDRKKYWLEEPYVPLHLIKNFEDKKIARKSNETKPGKVLAISGFNKRAPQKRGFSYLFSRMERPTYHQCGHCNKDVLTREAVSCQYCNGFFHKRHVRKSGSTAECRYSCHRCLDGMHVNSNSKRRKLDPKLGNIQSQKGRKVPSVGRPVKQKGSKKPLSKRRQGKSQTNKKVPSSIPLRRSARKAKCLYVQKKRNVGRKKGKKSKSKKVTSRKPKETSRKPKETTSRSKTAVTFERKKRTHICNSYWLNGLRLSTKPNDERVMLFKEKKHLGTSEGLSSTFDQPKCHLCCGDGCTLNYIACEICGEWFHGDAFGLTLENVRQLIGFRCHVCRDRTAPMCPHKNNNAMTHAEIKAATEYAEELPNSVSLQPLSQV 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4504g00004 1740 CDD PHD2_CHD_II 689 730 - -
Pral4504g00004 1740 SMART testlast3 491 551 IPR018501 -
Pral4504g00004 1740 ProSiteProfiles Zinc finger PHD-type profile. 686 733 IPR019787 -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 1582 1596 - -
Pral4504g00004 1740 Pfam PHD-finger 689 731 IPR019787 -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 159 183 - -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 105 119 - -
Pral4504g00004 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 746 IPR013083 -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 1551 1581 - -
Pral4504g00004 1740 Pfam DDT domain 495 547 IPR018501 -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 1486 1596 - -
Pral4504g00004 1740 ProSiteProfiles DDT domain profile. 491 551 IPR018501 -
Pral4504g00004 1740 PANTHER PHD FINGER FAMILY PROTEIN 2 1705 - -
Pral4504g00004 1740 SMART PHD_3 688 731 IPR001965 -
Pral4504g00004 1740 SMART PHD_3 1651 1698 IPR001965 -
Pral4504g00004 1740 SMART PHD_3 1434 1479 IPR001965 -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 913 940 - -
Pral4504g00004 1740 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 605 636 IPR028942 -
Pral4504g00004 1740 SUPERFAMILY FYVE/PHD zinc finger 682 742 IPR011011 -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 1519 1533 - -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 275 308 - -
Pral4504g00004 1740 ProSitePatterns Zinc finger PHD-type signature. 689 730 IPR019786 -
Pral4504g00004 1740 SUPERFAMILY FYVE/PHD zinc finger 1649 1703 IPR011011 -
Pral4504g00004 1740 MobiDBLite consensus disorder prediction 60 140 - -
Pral4504g00004 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1645 1705 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4504g00004 Pral-Chr4504 18972 31565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4504g00004 1 1707 PHD Transcription Factor Family AT5G12400 40.886 0.0 1137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pral4504g00004 DDT 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4504g00004 - - gmx:100800973 1975.67