Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral449g00006 ATGGACGCTGCAGCTTCATCATCATCCTCCTCGTCTTCTGCATATTTTCCCAGAAAATATGACATTTTTCTGAGTTTCAGAGGTGAGGACACTCGCAAAACCTTCACCAGCCATCTTCACAGTGCCCTATGCAAGAGCGGTATTCGAACCTACATAGATTATGAACTCCCAAGAGGGGATGACATTTCCCAATCGCTCATCCAAGCAATTGAAGATTCAAGCATATCTGCTGTGATCTTCTCTAAAAACTACGCTTGCTCAGAATGGTGTTTGAATGAACTGCTTAAGATACTGGAGTGTAAAGAAGTCCAAGGACAGCTTGTTATTCCTATTTTCTACCAAGTCGACCCATCTCACGTGCGCCATCAAAAGGGAACTTACCAGGAAGCTTTTGAAGAACACTTTGCCCAAAACCCAGGGAAAGTGAAGCAGTGGAAACATGCTCTTTTTGAAACTGCAAACTTAGCTGGTTGGGACTCTCGGATCTATAGGGACGAACCAGAACTCATTGAAAATATTGTCAACGACGTTCAGCAAAAGATTAACCCCAGTTATCCAAGTTCATTGATGCGTCTTGTTGGAATTGATGAAAATTGTAACGAGGTTGAAAGGTTACTGGAAAAAGTCCCAATAATTGGAATTTGGGGTATGGGTGGTATAGGCAAGACCACCATGGCTAAGGCTTTATTTACCAAACTCTCCTTCAAATTTGAGAGTTCTTGCTTTTTGGAAAATGTAAGAGAAGAGGTGGAAAAGCAAGGATTGACATACGTACGCAACAACCTTCTGTTTGAGCTACTAAAGGAAGAAAATTTCCCTCATAGGCCGCCTAATGTTGCAAGTAACGCCTCTGTTATGAGAAGACTAAGTTGTAAAAAAGTCTTTATAGTGCTTGATGATGTTAGTAGTTGGAAGCAATTAGAGTATTTAGCTCCATATTATGAATACTTGGGACCAGGCAGTAAAGTCATCATTACAGCAAGGCATAAACAATTGCTTGTAATTGCAGGAGTTAACGCAATTCATGAGGCCCGGCCTTTGAGCGCTCACAAGTCTGTTGAGCTCTTCAACCTCAAAGCCTTCCGCTCGTACAATCCAAAAATTGGATATGAATCCCTCTCACGAAGGGTTGTTCATTACGCAAAAGGCATTCCCTTAGTTTTGGTAGTATTGGGCTCATTTCTTCGTTCAAAAACTCCCAAGGAATGGGATAGTGCATTGTCAAAACTAAAGAAGAGTCCCAATGAAGACATTCTACAGGGAAAGAATATGTGA 1275 0.4149 MDAAASSSSSSSSAYFPRKYDIFLSFRGEDTRKTFTSHLHSALCKSGIRTYIDYELPRGDDISQSLIQAIEDSSISAVIFSKNYACSEWCLNELLKILECKEVQGQLVIPIFYQVDPSHVRHQKGTYQEAFEEHFAQNPGKVKQWKHALFETANLAGWDSRIYRDEPELIENIVNDVQQKINPSYPSSLMRLVGIDENCNEVERLLEKVPIIGIWGMGGIGKTTMAKALFTKLSFKFESSCFLENVREEVEKQGLTYVRNNLLFELLKEENFPHRPPNVASNASVMRRLSCKKVFIVLDDVSSWKQLEYLAPYYEYLGPGSKVIITARHKQLLVIAGVNAIHEARPLSAHKSVELFNLKAFRSYNPKIGYESLSRRVVHYAKGIPLVLVVLGSFLRSKTPKEWDSALSKLKKSPNEDILQGKNM 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral449g00006 424 Gene3D - 17 180 IPR035897 -
Pral449g00006 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 419 IPR027417 -
Pral449g00006 424 Pfam NB-ARC domain 210 416 IPR002182 GO:0043531
Pral449g00006 424 ProSiteProfiles TIR domain profile. 18 181 IPR000157 GO:0007165
Pral449g00006 424 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 183 - -
Pral449g00006 424 Gene3D - 347 423 IPR042197 -
Pral449g00006 424 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 158 IPR035897 -
Pral449g00006 424 Gene3D - 181 339 IPR027417 -
Pral449g00006 424 SMART till_3 19 155 IPR000157 GO:0007165
Pral449g00006 424 PRINTS Disease resistance protein signature 288 302 - -
Pral449g00006 424 PRINTS Disease resistance protein signature 381 395 - -
Pral449g00006 424 PRINTS Disease resistance protein signature 211 226 - -
Pral449g00006 424 Pfam TIR domain 19 187 IPR000157 GO:0007165
Pral449g00006 424 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 412 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral449g00006 Pral-Chr449 66192 69311 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral449g00006 18 413 WRKY Transcription Factor Family AT4G12020 29.032 1.07e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral449g00006 - - pcin:129289344 607.446