Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4490g00042 ATGGTCTTCACAGCAGCCTTTATGCATGAAGATGGCCCTTTTTCTTTCTCCAGGAAGAGGCTGAGAGTATCAGATTTTGGATATCAAGATCTACATCCACACGCATACGCAGGATGTTCCAGTGATGCGCCATTATCTTCGCATCTGGATGTAGAAAGGGCTATTGGTGATATACCATCTTGTTGCAGTCTTGATGATAGATTTGATTCAGATTCTGGATTGGATATGAGCTGCCAGTCAAATATTAAAAGCGTTGATGATCCTGTATGCTTTACAACAGGAAATATTTCATTTCAGGATCAGAGTCATCCTGGCTATATGCAGCCTGCTTTTGTTAGTGGTTGGATGTATGTCAACGAAAATGGACAAATGTGTGGTCCCTATATTCAGGACCAACTATATGAAGGATTAACTACTGGTTTCTTGCCAGTTGAGCTTCCTGTGTATCCTGTGATTAATGGCACATTAATGAACCCTGTACCATTGAACTACTTCAAGCAGTTTCCTGACCATGTTTCCACAGGGTTCTTATATCTGAGCACAAGTCGCTCAGTTCTAACCACGCCTACAGGTTGCTCCACATCATCTGGCAAGGATATGACATCATATAGACAAGGATCCTTTGAGCACGCTCCTTCTGTAGCTGTCAACCTTGATTCACAGTTAGTTTCTGTCACATTCAGCTACACCAGTAAGGAAATCTTAACACCGATCTCAAAGTTACATGAAGAATGCTGTTGGCTTTATGAGGATGAAAAGGGAATGAAGCATGGACCACATTCCATTTTGGAATTAATATCCTGGCATCATTATGGACATCTCCGAGATTCATCGGTGATTCATCATACTGAAAGTAAGTGTAGCCCCTTTGTCCTTTTGTCTGCTATAAATGCATGGAAAACAGGAAAGCTTGAAAATATCTGTAGATCAGATTCCAAAAGTGACAGGGCTTGTAGTGATATCAGAAGCTTCATCTGTGAAATATCTGAGGAAATTTGTTCTCAGCTACATTCAGGAGTGATGAAAACTGCCCGCAGGGTGGTGTTGGATGAGATTATCAGTAACAACATTGCAGAATTTGTTACTGAAAAGAAATCTCGGAGGCATAAGCATGACTCAGTTGATCAGCCTTCTGGGACTAGCTTGTTAGACTGCAGAATGACTGAGGCTGCTGTGGAGATGAGAAAAGGCACGGTTCTTACAAGCGAGCCAGCATCTTCCCAAATGCTTGATGATCAGTCTTGTGAAGTTTCCAGAGTGTCTCCAACAAGCACTAAATCAGTTGGAAGCATTGAAAACTTTTGGTGTTCATATGCTGTTGTTCGTAAAGTGCTTTGTGATCATTGCATGCAAGTCATGTGGAATGCTGTGGTTTATGACTCTATGGCAGGGTACATACATAAGTGGAGAAAGAGACAACGTTGGTCTACTTGTAGTAAGCCTCGACCATCTATTTATGGATATAAAGATTATGGTGGAATGATCACATCAGAAGAAGCTTTGCTTCCCAGGCCAGTTTCCTCTGAACATGTTGCTGTTTGGCATCCTCATGGTGGAGTGGTGGCACTGGAGAGAGACTATCGTAGTCAATCGTCTTCTATTGTCTTGAAAGATGGTAATATTCCAGAAAATGGAAGGGTGTCATTTTCTGGCTGTGATCGTATAGATTTGATATGCATTCTTGAAAGTGTGGAGAATGAGCTTCACTCGATATCAGAGGCATCTTTAACTGAATACATTAAAAGTTTAGTTGACAAGGAAGTGGAAAGATTATTTAAATGTTCTGAAGAAGACAACTTGAACAAGGATGCTGTTACTGATGACATTTTTGAAGAGATATCTTGTGACAAAACATCTGAAGAGCGGATTTTATCTGGCAATAAGGTTGCTATGAAAGGAGATCGTCTTCAAGATACCATATCTGGAAACCGTATGTCTACTTTATTCTCAAGTGCATTTCAGGAGTTGCATGCCAATGTAAGTGATGTGGTTAATGAAAAGGAGATTGGCGACATATCACCTCCTGGATGTGAAAAGAATTTAAAAACTATTATCCCACAATACAATTATAAGTATCGACCTTCAAGATCAGTTGAAAGTGTACCTAAGATAACAAAATATGTTACAACAGCCCTATGCCGACAGAAATTGCATTCTGAGGTTCTTGAAGAGTGGAAATCTTTGTTTCTTGATGCTGCATTTGATCAACTTTTTGCATCATTCTGCACTACAAAGAAGATCAGCCAGCCTGATGGTTACAAGGAAGGGAAAATACTGAAGTCATCTGGGGAACATTTGAACAATCCAACTCTGGGAAGAATGAAGAAAATACCCAAAAGTTCTTCATCAGAAAATTCTCGGATGGTTGGGAAATATACATATCATCGAAAGAAGCTGCCACAGAAAGAGCGACATTCTTCTCAACACATAACTGCACCAGTCAAAAAACAAGTTGATAAGAAGAAGAAATGTTTTTCTGGGGATTTGGATGATTCTGCCAAAGTTGGAATATCTCCTGATAAAACTGTGCAGACCAAGCTGATAAAAGGGAAGAAGGATAAACAGGCTAATGGAAAGTCTCTCGCTGCTGGTGCTAAAAGGCACTTGCAGAGTAAGAAGTTGTCTATAAATAATGCAACTAGTAAAAAATTAGTGAAGCATTCACAGGAAGTCCAAGATGATGTAAAGAATGATGAGAAAAGTAATGGAGAGAAGATTTTAGCTGTTGTGGAAAATAGCGTTGGCAAGAAAAAAGCAGTTGATAGCAGTGGTCGTGATGGTGCCATTCATGGAAAGTCCACTCGTCATTGCTCCAAGGGAGCTCTTAATGTGACAAATAAAGCATCAAAACTAAAAAGGAAGCATCTAGCTGATGACATGCCATCCTCACGTCCTTCAAAGGTTTTGAAGATTGCTAATGACGGTTCAAAGGTTGGAGTTGGCGGACACGCCATGTCAAAGACGAAGTCTGCTAAATCCAAGCCATTGAAGTCATGCCCTAGATCTGACGGATGTGCCAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTGTAAATGCCAGTTCTGCTGATAGAGCACATGTTAGGGGAACACTCTGTGTTCAAAAGAACTCTGTACCATCTGATAGTAATCCATTTCATTGGTCAAATTGTAAGGTTCTTTCTGCACGCACAAATAGAGTGAAAATGCGTAACCTTCTTGCAGCTGCGGAAGGTGCTGATCTTCTGAAAGCCACTCAATTGAAGGCAAGGAAAAAACGTTTACGTTTTCAAAGAAGTAAAATACATGACTGGGGTATTGTTGCCTTGGAGTCAATAGAGGCGGAAGACTTTGTGATTGAATATATTGGAGAATTAATCCGTCCTCAGATATCTGATATACGTGAACGTCAATATGAAAAGATGGGAATTGGCAGCAGTTACTTGTTTAGACTTGATGATGGCTATGTGGTTGATGCTACAAAAAGAGGTGGTATTGCAAGATTTATAAATCACTCTTGTGAGCCTAATTGCTATACCAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGTCATATAGCTGCTGGTGAAGAAATTACATACAATTATAAATTTCCTTTGGAGGAGAATAAGATTCCCTGCAACTGTGGGTCCAAAAAGTGTCGCGGATCACTGAATTAG 3684 0.4015 MVFTAAFMHEDGPFSFSRKRLRVSDFGYQDLHPHAYAGCSSDAPLSSHLDVERAIGDIPSCCSLDDRFDSDSGLDMSCQSNIKSVDDPVCFTTGNISFQDQSHPGYMQPAFVSGWMYVNENGQMCGPYIQDQLYEGLTTGFLPVELPVYPVINGTLMNPVPLNYFKQFPDHVSTGFLYLSTSRSVLTTPTGCSTSSGKDMTSYRQGSFEHAPSVAVNLDSQLVSVTFSYTSKEILTPISKLHEECCWLYEDEKGMKHGPHSILELISWHHYGHLRDSSVIHHTESKCSPFVLLSAINAWKTGKLENICRSDSKSDRACSDIRSFICEISEEICSQLHSGVMKTARRVVLDEIISNNIAEFVTEKKSRRHKHDSVDQPSGTSLLDCRMTEAAVEMRKGTVLTSEPASSQMLDDQSCEVSRVSPTSTKSVGSIENFWCSYAVVRKVLCDHCMQVMWNAVVYDSMAGYIHKWRKRQRWSTCSKPRPSIYGYKDYGGMITSEEALLPRPVSSEHVAVWHPHGGVVALERDYRSQSSSIVLKDGNIPENGRVSFSGCDRIDLICILESVENELHSISEASLTEYIKSLVDKEVERLFKCSEEDNLNKDAVTDDIFEEISCDKTSEERILSGNKVAMKGDRLQDTISGNRMSTLFSSAFQELHANVSDVVNEKEIGDISPPGCEKNLKTIIPQYNYKYRPSRSVESVPKITKYVTTALCRQKLHSEVLEEWKSLFLDAAFDQLFASFCTTKKISQPDGYKEGKILKSSGEHLNNPTLGRMKKIPKSSSSENSRMVGKYTYHRKKLPQKERHSSQHITAPVKKQVDKKKKCFSGDLDDSAKVGISPDKTVQTKLIKGKKDKQANGKSLAAGAKRHLQSKKLSINNATSKKLVKHSQEVQDDVKNDEKSNGEKILAVVENSVGKKKAVDSSGRDGAIHGKSTRHCSKGALNVTNKASKLKRKHLADDMPSSRPSKVLKIANDGSKVGVGGHAMSKTKSAKSKPLKSCPRSDGCARTSIDGWEWHKWSVNASSADRAHVRGTLCVQKNSVPSDSNPFHWSNCKVLSARTNRVKMRNLLAAAEGADLLKATQLKARKKRLRFQRSKIHDWGIVALESIEAEDFVIEYIGELIRPQISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEENKIPCNCGSKKCRGSLN 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4490g00042 1227 MobiDBLite consensus disorder prediction 886 900 - -
Pral4490g00042 1227 SUPERFAMILY SET domain 1083 1224 IPR046341 -
Pral4490g00042 1227 SMART set_7 1088 1211 IPR001214 GO:0005515
Pral4490g00042 1227 MobiDBLite consensus disorder prediction 849 900 - -
Pral4490g00042 1227 SUPERFAMILY GYF domain 242 296 IPR035445 -
Pral4490g00042 1227 Pfam SET domain 1100 1204 IPR001214 GO:0005515
Pral4490g00042 1227 Gene3D - 233 322 IPR035445 -
Pral4490g00042 1227 MobiDBLite consensus disorder prediction 759 818 - -
Pral4490g00042 1227 MobiDBLite consensus disorder prediction 974 1001 - -
Pral4490g00042 1227 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 795 1227 IPR044570 GO:0042800|GO:0051568
Pral4490g00042 1227 SMART PostSET_3 1211 1227 IPR003616 -
Pral4490g00042 1227 ProSiteProfiles GYF domain profile. 244 294 IPR003169 GO:0005515
Pral4490g00042 1227 ProSiteProfiles Post-SET domain profile. 1211 1227 IPR003616 -
Pral4490g00042 1227 MobiDBLite consensus disorder prediction 763 789 - -
Pral4490g00042 1227 ProSiteProfiles SET domain profile. 1088 1205 IPR001214 GO:0005515
Pral4490g00042 1227 Gene3D SET domain 985 1227 IPR046341 -
Pral4490g00042 1227 MobiDBLite consensus disorder prediction 871 885 - -
Pral4490g00042 1227 CDD SET_SETD1 1076 1223 IPR037841 GO:0042800|GO:0048188
Pral4490g00042 1227 MobiDBLite consensus disorder prediction 804 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4490g00042 Pral-Chr4490 601412 621600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4490g00042 1087 1227 C2H2 Transcription Factor Family AT2G23740 38.037 3.42e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4490g00042 SET 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4490g00042 - - gmx:100805708 1295.8