Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4490g00040 ATGACATGTGCAGCCTGTGTAAATTCTGTTGAAGGTATTTTAAGGAATCTTACTGGTGTCAAAAGGGCTGTTGTAGCTTTGGCAACTTCCTTGGGGGAAGTTGAATATGATCCTACTATAATTAGTAAAGATGATATAATCAATTCAATTGAAGATGCTGGTTTTGAAGCTACATTTGTACAGAGCAGTGAGCAAGATAAAATACGTCTGGGGATTGTTGGTTTGTACAGCCTGACTGATGCACAAGTTTTAGAAGGCATGCTCAGCAGCATGAAAGGAGTAAAGAAGTTTCATTTGGATCAGATATCATGTGAACTGGAAGTTCTTTTTGATCCTGAAGTTCTCAATTCTAGATCCCTAGTTGACGGGATTGAAGGAGGAAGCAATGGGAAGTTTAAACTACAAGTTAGGAGCCCGTATGCAAGAATGGTCTCTAAGGATATTGAAGAGATCACAACTATGTTTCGACTTTTTACCTCAAGCCTGATTCTAAGTATTCCTTTCTTTCTCATTGGTGTAGTTTGTCCTCATATACCAATGATATACTCCATACTGCTTTGGAGATGTGGGCCTTTCCTCATGGATGATTGGCTGAAGTGGGCATTAGCTAGTATTATCCAGTTTGGGATTGGAAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAAGAATGGTTCAACTAACATGGACGTGTTGGTTGCTTTGGGAACTACTGCTTCGTATGTCTATTCTGTTTGTGCTCTTCTTTATGGTGCCCTTACTGGATTCTGGTCTCCGACATATTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGGAAGTATTTGGAATGCCTTGCAAAGGGGAAGACGTCAGATGCCATCAAGAAGTTAGTAGAATTGGCCCCTGCAACGGCTTTGTTGGTAGTCAAAGATAAAGGTGGTAAACCTGTTGAAGAAAGGGAAATAGATTCATTGCTCATTCAGCCTGGTGACACTTTAAAGGTTCTTCCTGGTACAAAGATTCCTGCTGATGGAATCGTTACATGGGGCTCAAGTCATGTAGATGAGAGTATGGTAACTGGTGAAGCTGTGCCTGTTTCAAAGGAAGTTAATGCATCTGTTATTGGAGGTACTATAAATTTACATGGTGTCCTTCACATTCAAGCCACCAAAGTAGGAGCTGATACAGTTTTGAGTCAGATAATTAGTTTGGTAGAGACAGCTCAGATGTCCAAAGCCCCTATTCAGAAATTTGCTGATTATGTAGCAAGCATTTTTGTGCCTACGGTTGTTTCTTTGGCATTGTTGACGTTATTGGCTTGGTATGTTGCTGGAGCCCTGGGAGCTTATCCTGATGAATGGCTGCCAAAAAATGGAAATCACTTTGTTTTTGCTCTTATGTTTGCAATATCTGTGGTGGTGATTGCATGTCCCTGTGCACTCGGGTTGGCAACACCAACTGCTGTCATGGTAGCAACAGGAGTTGGTGCTAAGAATGGGGTGTTAATTAAAGGAGGAGATGCCTTGGAAAAGGCTCAGATGGTGAAGTACCTAATATTTGATAAAACGGGCACTCTGACTCAGGGAAAAGCCACTGTTACGACTGCCAAGGTATTCACAGGAATGGAACGGGGAGAGTTCCTTACACTTGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCGCTGGGGAAGGCAATAGTAGAGTATGCGCGCCATTTTCATTTCTTTGATGAGTCATCTGCAGCAACTGGTACCAAAGATGCTGCCAAGGAGATTAAAGCTGGATGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGGGGTGTCCAGTGCCTTTTACATGGGAAGCGTCTTCTGGTTGGCAACAGGAAGCTAATAGTGGAAAGTGGCATAAATGTTCCAACCCAAGTGGAAAAATTTGTGGTGGAGCTGGAAGAAAGTGCGAAGACAGGGATACTTGTTGCATATGGTGATGAATTAATTGGCGTCTTAGGGGTTGCAGACCCACTGAAAAGAGAAGCTTCTGTGGTTATAGAAGGCCTCCGGAAAATGGGTGTCAGGCCTGTTATGGTTACAGGAGATAACTTGAGAACAGCTCAGGCTGTGGCCAAGGAGGTCGGAATCGAAGATGTAAGAGCAGAGGTGATGCCAGCAGGGAAGGCTGAGGTTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTGGCAATGGTGGGTGATGGAATTAACGACTCTCCCGCATTAGCTGCTGCAGACGTCGGCATGGCAATCGGGGCTGGCACTGATATTGCAATAGAAGCTGCAGACTATGTACTGATGAGAAACAATCTGGAAGATGTGATCACAGCCATTGATCTCTCGAGGAAGACATTTTCTCGGATTCGATTGAACTATGTATTCGCAATGGCTTATAATGTTGTTGCTATCCCGGTTGCTGCTGGGGTTCTCTACCCTTCATTAGGGATTGAGCTGCCTCCTTGGGTTGCTGGTGCATGCATGGCTCTCTCATCTGTTAGTGTTGTTTGCTCTTCTTTGCTTCTTAGGAGATATAGAAAACCCAAACTTACCACAATACTTGAAATAGTTGTAGAATAA 2586 0.4358 MTCAACVNSVEGILRNLTGVKRAVVALATSLGEVEYDPTIISKDDIINSIEDAGFEATFVQSSEQDKIRLGIVGLYSLTDAQVLEGMLSSMKGVKKFHLDQISCELEVLFDPEVLNSRSLVDGIEGGSNGKFKLQVRSPYARMVSKDIEEITTMFRLFTSSLILSIPFFLIGVVCPHIPMIYSILLWRCGPFLMDDWLKWALASIIQFGIGKRFYIAAGRALKNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKPVEEREIDSLLIQPGDTLKVLPGTKIPADGIVTWGSSHVDESMVTGEAVPVSKEVNASVIGGTINLHGVLHIQATKVGADTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLAWYVAGALGAYPDEWLPKNGNHFVFALMFAISVVVIACPCALGLATPTAVMVATGVGAKNGVLIKGGDALEKAQMVKYLIFDKTGTLTQGKATVTTAKVFTGMERGEFLTLVASAEASSEHPLGKAIVEYARHFHFFDESSAATGTKDAAKEIKAGWLYDVSDFSALPGRGVQCLLHGKRLLVGNRKLIVESGINVPTQVEKFVVELEESAKTGILVAYGDELIGVLGVADPLKREASVVIEGLRKMGVRPVMVTGDNLRTAQAVAKEVGIEDVRAEVMPAGKAEVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIELPPWVAGACMALSSVSVVCSSLLLRRYRKPKLTTILEIVVE 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4490g00040 861 PRINTS P-type cation-transporting ATPase superfamily signature 758 770 - -
Pral4490g00040 861 PRINTS P-type cation-transporting ATPase superfamily signature 735 754 - -
Pral4490g00040 861 PRINTS P-type cation-transporting ATPase superfamily signature 660 671 - -
Pral4490g00040 861 PRINTS P-type cation-transporting ATPase superfamily signature 682 692 - -
Pral4490g00040 861 PRINTS P-type cation-transporting ATPase superfamily signature 351 365 - -
Pral4490g00040 861 PRINTS P-type cation-transporting ATPase superfamily signature 515 529 - -
Pral4490g00040 861 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 857 - -
Pral4490g00040 861 CDD HMA 1 58 IPR006121 GO:0046872
Pral4490g00040 861 SUPERFAMILY Calcium ATPase, transmembrane domain M 248 809 IPR023298 -
Pral4490g00040 861 Pfam Heavy-metal-associated domain 1 56 IPR006121 GO:0046872
Pral4490g00040 861 SUPERFAMILY HAD-like 514 841 IPR036412 -
Pral4490g00040 861 FunFam Copper-exporting P-type ATPase 615 666 - -
Pral4490g00040 861 NCBIfam HAD-IC family P-type ATPase 268 537 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4490g00040 861 NCBIfam HAD-IC family P-type ATPase 616 815 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4490g00040 861 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872
Pral4490g00040 861 Pfam haloacid dehalogenase-like hydrolase 511 749 - -
Pral4490g00040 861 Gene3D - 482 792 IPR023214 -
Pral4490g00040 861 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
Pral4490g00040 861 ProSitePatterns E1-E2 ATPases phosphorylation site. 517 523 IPR018303 -
Pral4490g00040 861 Gene3D - 283 405 - -
Pral4490g00040 861 NCBIfam heavy metal translocating P-type ATPase 229 844 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pral4490g00040 861 Pfam E1-E2 ATPase 298 495 - -
Pral4490g00040 861 SFLD C1.7: P-type atpase like 497 787 - -
Pral4490g00040 861 FunFam Probable copper-transporting ATPase HMA5 638 792 - -
Pral4490g00040 861 SUPERFAMILY Calcium ATPase, transduction domain A 315 401 IPR008250 -
Pral4490g00040 861 Gene3D - 615 666 IPR023299 GO:0000166
Pral4490g00040 861 Gene3D - 522 614 IPR023299 GO:0000166
Pral4490g00040 861 SFLD p-type atpase 497 787 IPR044492 -
Pral4490g00040 861 FunFam Copper-exporting P-type ATPase A 1 60 - -
Pral4490g00040 861 CDD P-type_ATPase_Cu-like 156 831 - -
Pral4490g00040 861 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Pral4490g00040 861 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Pral4490g00040 861 PRINTS Copper-transporting ATPase 1 signature 212 237 - -
Pral4490g00040 861 FunFam Copper-transporting ATPase 1, putative 283 405 - -
Pral4490g00040 861 FunFam Copper-transporting ATPase RAN1 522 614 - -
Pral4490g00040 861 Gene3D - 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4490g00040 Pral-Chr4490 559738 566405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4490g00040 1 861 Primary Pumps ATPases AT5G44790 76.709 0.0 1352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4490g00040 K17686 - gmx:100778219 1441.79