Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4490g00017 ATGGTTTCTTCTTGGCCTCTCTCTCAGCCTACCAGTCACAGCTTCTTCTCTAAAACCCAGTTGAGAGGATTTGGCCATGGCTCTCGGCGACCCAGCTTCTCATTTTGCCGCGACTCCGAAAGCAAAGTTCGACCCATCAAAGCTTTGGTTGATTCAGCCCCATTCCCCTTATTCCAACCTCCCAAAGTTGAAGAGTCGTCGTCTGAGTTGGAGCCAGCAGACCCTGATTTCTACAAGATAGGTTATATTCGAAGCATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCTGACGGTTTTGGTGTGTATGCTTCTAAAGATGTTGAACCTCTTCGCCGACCCAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCGTGCGTCAGAAGCTCCCATGGATGTTCTTCCCTGATATAATTCCAGTGGGACATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGCACCTTAGGTTAGCATGCCTGCTGTTATATGCAATGGACTGTCAGGAAAACTTTTGGCAGTTGTATGGTGACTTCTTACCCAGTGCTGATGAGTGCACTAGCTTACTTCTGGCGAAAGAGGAAGAACTGTTGGAGCTGCAGGATTCGAATCTTGCATCTACCATAAGGAATCAGCAACGTCATGCCTTAGAATTTTGGGAGAAGAATTGGCACAACAGTGTTCCCCTTAAGATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATGTGGGCAGTTGGTATAGCACAATCACGATGCATTAACATGCAAATGAGGATTGGTGCACTACATCAAGATGCAAATATGCTGATTCCTTATGCTGACATGCTGAACCATTCGTTTGAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGGATGCTTGAGGTGCTGATAAATGCGGGACAGAGGATTAGAAAGGGAGATGAGAATCCTTGGGATGAGATCAAATTCTCTGGAGATGCACGCATACATTTGGATACCTTCTTGTCAGTGTTCAACATATCTGGCCTTCCTGAAGAGTATTATCATAACACTCTGCTATCTAATGAGGGCGATACTTTTGTTGACGGAGCAGTCATAGCTACAGCACGAACACTGCCAACTTGGTCAGATGGGGATGTTCCTCCAATTCCTAGTGTGGAACGGAAGGCTGTGAAGGAGTTACAAAATGAATGCCAACAAATGCTTTCAGAATTTCCCACAACCTCCAAGCAAGACCAAAAATTGCTAGATTCACTGCAGGATGCTACCAGGACTCTTGAAGCTGCAATAAAGTACAGATTGCACCGGAAGTTGTTCATAGAGAAAGTCATCCAAGCATTGGACATCTATCGAGACAGATTACTCTTCTGA 1377 0.4481 MVSSWPLSQPTSHSFFSKTQLRGFGHGSRRPSFSFCRDSESKVRPIKALVDSAPFPLFQPPKVEESSSELEPADPDFYKIGYIRSMRAYGVEFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTVRQKLPWMFFPDIIPVGHPIFDIINSTNPETDWHLRLACLLLYAMDCQENFWQLYGDFLPSADECTSLLLAKEEELLELQDSNLASTIRNQQRHALEFWEKNWHNSVPLKIKRLARDPQRFMWAVGIAQSRCINMQMRIGALHQDANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQRIRKGDENPWDEIKFSGDARIHLDTFLSVFNISGLPEEYYHNTLLSNEGDTFVDGAVIATARTLPTWSDGDVPPIPSVERKAVKELQNECQQMLSEFPTTSKQDQKLLDSLQDATRTLEAAIKYRLHRKLFIEKVIQALDIYRDRLLF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4490g00017 458 Gene3D set domain protein methyltransferase, domain 1 83 318 - -
Pral4490g00017 458 Pfam Rubisco LSMT substrate-binding 388 439 IPR015353 -
Pral4490g00017 458 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 331 449 IPR036464 -
Pral4490g00017 458 Pfam SET domain 99 317 IPR001214 GO:0005515
Pral4490g00017 458 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 327 - -
Pral4490g00017 458 SUPERFAMILY SET domain 98 317 IPR046341 -
Pral4490g00017 458 CDD SET_LSMT 90 317 - -
Pral4490g00017 458 Gene3D - 350 455 IPR036464 -
Pral4490g00017 458 FunFam Plastid transcriptionally active 14 335 455 - -
Pral4490g00017 458 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 57 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4490g00017 Pral-Chr4490 183687 193599 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4490g00017 SET 2.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4490g00017 - - gmx:100786962 753.821