Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4490g00016 ATGGTTTCTTCTTGGCCTCTCTCTCAGCCTACCAGTCACAGCTTCTTCTCTAAAACCCAGTTGAGAGGATTTGGCCATGGCTCTCGGCGACCCAGCTTCTCATTTTGCCGCGACTCCGAAAGCAAAGTTCGACCCATCAAAGCTTTGGTTGATTCAGCCCCATTCCCCTTATTCCAACCTCCCAAAGTTGAAGAGTCGTCGTCTGAGTTGGAGCCAGCAGACCCTGATTTCTACAAGATAGGTTATATTCGAAGCATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCTGACGGTTTTGGTGTGTATGCTTCTAAAGATGTTGAACCTCTTCGCCGACCCAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCGTGCGTCAGAAGCTCCCATGGATGTTCTTCCCTGATATAATTCCAGTGGGACATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGCACCTTAGGTTAGCATGCCTGCTGTTATATGCAATGGACTGTCAGGAAAACTTTTGGCAGTTGTATGGTGACTTCTTACCCAGTGCTGATGAGTGCACTAGCTTACTTCTGGCGAAAGAGGAAGAACTGTTGGAGCTGCAGGATTCGAATCTTGCATCTACCATAAGGAATCAGCAACGTCATGCCTTAGAATTTTGGGAGAAGAATTGGCACAACAGTGTTCCCCTTAAGATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATGTGGGCAGTTGGTATAGCACAATCACGATGCATTAACATGCAAATGAGGATTGGTGCACTACATCAAGATGCAAATATGCTGATTCCTTATGCTGACATGCTGAACCATTCGTTTGAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGGATGCTTGAGGTGCTGATAAATGCGGGACAGAGGATTAGAAAGGGAGATGAGATGACGGTTGATTACATGAGCAGACAAAAAAATGACATGTTTATGCAAAGATATGGCTTCTCATCATCTGTGAATCCTTGGGATGAGATCAAATTCTCTGGAGATGCACGCATACATTTGGATACCTTCTTGTCAGTGTTCAACATATCTGGCCTTCCTGAAGAGTATTATCATAACACTCTGCTATCTAATGAGGGCGATACTTTTGTTGACGGAGCAGTCATAGCTACAGCACGAACACTGCCAACTTGGTCAGATGGGGATGTTCCTCCAATTCCTAGTGTGGAACGGAAGGCTGTGAAGGAGTTACAAAATGAATGCCAACAAATGCTTTCAGAATTTCCCACAACCTCCAAGCAAGACCAAAAATTGCTAGATTCACTGCAGGATGCTACCAGGACTCTTGAAGCTGCAATAAAGTACAGATTGCACCGGAAGTTGTTCATAGAGAAAGTCATCCAAGCATTGGACATCTATCGAGACAGATTACTCTTCTGA 1449 0.4438 MVSSWPLSQPTSHSFFSKTQLRGFGHGSRRPSFSFCRDSESKVRPIKALVDSAPFPLFQPPKVEESSSELEPADPDFYKIGYIRSMRAYGVEFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTVRQKLPWMFFPDIIPVGHPIFDIINSTNPETDWHLRLACLLLYAMDCQENFWQLYGDFLPSADECTSLLLAKEEELLELQDSNLASTIRNQQRHALEFWEKNWHNSVPLKIKRLARDPQRFMWAVGIAQSRCINMQMRIGALHQDANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQRIRKGDEMTVDYMSRQKNDMFMQRYGFSSSVNPWDEIKFSGDARIHLDTFLSVFNISGLPEEYYHNTLLSNEGDTFVDGAVIATARTLPTWSDGDVPPIPSVERKAVKELQNECQQMLSEFPTTSKQDQKLLDSLQDATRTLEAAIKYRLHRKLFIEKVIQALDIYRDRLLF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4490g00016 482 CDD SET_LSMT 90 337 - -
Pral4490g00016 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 57 450 - -
Pral4490g00016 482 Gene3D set domain protein methyltransferase, domain 1 83 334 - -
Pral4490g00016 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 473 IPR036464 -
Pral4490g00016 482 SUPERFAMILY SET domain 98 337 IPR046341 -
Pral4490g00016 482 Pfam Rubisco LSMT substrate-binding 412 463 IPR015353 -
Pral4490g00016 482 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
Pral4490g00016 482 ProSiteProfiles SET domain profile. 61 323 IPR001214 GO:0005515
Pral4490g00016 482 Gene3D - 335 479 IPR036464 -
Pral4490g00016 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Pral4490g00016 482 FunFam Plastid transcriptionally active 14 359 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4490g00016 Pral-Chr4490 183687 193599 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4490g00016 SET 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4490g00016 - - gmx:100786962 808.905